Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq65442 86.0 2e-12 >seq65442 Length=2413 Score = 86.0 bits (94), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 13/218 (6%) Strand=Plus/Plus Query 4215 TTCGGTAGTGAACCTATCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCC 4274 ||| || ||| | ||||||| ||| |||| || |||||||| | || | | | || Sbjct 116 TTCTGTTGTGTATTTATCCTGCCCGTTTTGGTCTTGCCATTTACGGGTTTGAACTGCGCC 175 Query 4275 TTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCT-GGCAATTTCTGCCAGTTTCC 4333 ||||||||||| | | |||||| || ||||| ||| ||||| || ||||| || Sbjct 176 CTCAAGATAAACTTTCGCGCCTTTCTTCAAATATT-GCTCGGCAACTTTTGCCAATT--- 231 Query 4334 CGCTCATT-------ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGC 4386 ||||||| || || |||||||| ||||| |||| || | || |||| | Sbjct 232 -GCTCATTGAAAATAACAACACGGTGCCATTCCGTGCGCTCTTTGCGTTCGCCAGAAGCC 290 Query 4387 TTATCACGCCATTGTTCTGACGTAGCAACTGTAAGGTT 4424 ||||||||||| ||| || || || || | |||||| Sbjct 291 TTATCACGCCAAGATTCAGATGTTGCCACCGAAAGGTT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126581314888192