Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq59718 158 7e-34 seq77519 104 1e-17 >seq59718 Length=6799 Score = 158 bits (174), Expect = 7e-34 Identities = 186/251 (74%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 78375 TAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCCGCACAAATGC 78434 ||||| || || ||||||| || |||| |||||| || | ||||| |||| | || Sbjct 1686 TAAATGTGTGCATCACCGAAGGTATGAACGAAGTCGCCCAATTCCAAATCGCATACTTGT 1745 Query 78435 GCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCCTAAGAATACG 78494 |||| || ||| || |||||||| || |||||||||||||||| |||||||| Sbjct 1746 GCAAGCATCATTGTGAGCAATGCGTAAGATGCAATGTTAAATGGAACGCCTAAGAAAGTA 1805 Query 78495 TCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATACGTAAAACTGG 78554 || |||||| ||||||||||||||| |||| ||||| ||| | ||||| || ||| Sbjct 1806 TCCGCGCTTCTTTGGTACAATTGGCAGCTTAATTTTCCGTCA---GCAACGTAGAATTGG 1862 Query 78555 AATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATTCCAAGCAGAC 78614 || | || ||||||||||||| ||||| | || | ||| ||| ||||||||||| Sbjct 1863 AACAAAGAATGACAAGGCGGTAAGGCCATGTTGTCAACGTCGGCAACGTTCCAAGCAGAA 1922 Query 78615 ACAATATGTCT 78625 || || || || Sbjct 1923 ACGATGTGCCT 1933 >seq77519 Length=1156 Score = 104 bits (114), Expect = 1e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 78354 ACTTGCGGTATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCT 78413 |||||| | ||| || |||| ||||| | ||||| | |||||||| || || ||| Sbjct 987 ACTTGCTCTTCATGGTTACTGTATATATGCACATCACCAAATGTGTGAACAAATTCGCCT 928 Query 78414 ACTTCCAGTCCGCACAAATGCGCAATAAT-ATGTGTAAGTAATGCGTATGAAGCAATGTT 78472 | || || |||| | ||||| | || ||| || | | ||||| ||||||||| Sbjct 927 AGCTCGAGCTCGCAAACTTGCGCCACCATCATG-GTCAACAGAGCGTAACTAGCAATGTT 869 Query 78473 AAATGGAATTCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCC 78532 ||| || | || ||||||| ||| | |||||||| ||||| |||||||| || ||| Sbjct 868 AAACGGTACGCCCAAGAATAAATCAGCACTTCGTTGATACAACTGGCAACTCAGTTTTTT 809 Query 78533 ATCAACTGATACGTAAAACTGGAATAGAGTGTGACAAGGCGGTA 78576 ||| || || ||||| ||||||| || || || ||||||| Sbjct 808 ATCGTGCGACACATAAAATTGGAATAAGGTATGGCACGGCGGTA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299760700153600