Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq17837 118 3e-22 >seq17837 Length=285 Score = 118 bits (130), Expect = 3e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24564 GAACACCATTCGTTCACGCCGTGGTGACAAATCAAAAGACCATCCGACACCGTTTGTATC 24623 |||||| ||||||| ||||||||||| ||||||||||| || || ||||| ||||| | Sbjct 229 GAACACTGTTCGTTCGCGCCGTGGTGATAAATCAAAAGAGCACCCAACACCTTTTGTTGC 170 Query 24624 CATCCAGCAGCGTCTGCATACCGACGACGCCACCGGCTTCATGCTCGCGGGTGGGATGGG 24683 || || ||||| || | ||| || || | || || ||| | ||||||| ||||| Sbjct 169 AATACAACAGCGCCTTAACGTCGATGATGCGTCAGGGTTTATGTTGTCGGGTGGCATGGG 110 Query 24684 GATGGATTTCCACCACGTCACAATCCCTGCGCTGGTTAGCGAAGAGTATATCGATTCGCT 24743 | |||||||| ||| | |||||| ||||||| ||| ||||| ||| | || || Sbjct 109 CGTTGATTTCCATCACATGCTTATCCCTTCGCTGGTAAGCCGTGAGTACATCAAATCACT 50 Query 24744 GCCTGAGCCGTGGCGGTCGCTGTGCTGG 24771 |||||| | || |||| |||||| Sbjct 49 TGGTGAGCCTTATCGAACGCTATGCTGG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154730381277184