Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq106671 95.1 3e-14 >seq106671 Length=381 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 ||||| || ||||||||||| | ||||| ||| | ||| ||| | |||| |||| || Sbjct 359 GCTGGAACGAAATACCGTGGACAGTTCGAGGAAAGAATGAAAGCTGTTATGCAAGAGATT 300 Query 48549 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48608 ||||| | |||||| | ||||||||||| | |||| ||| || |||||||| Sbjct 299 GAAAAAAATCCTGACGTAATTCTCTTCATTGATGAGATTCATACTATTATTGGTGCTGGA 240 Query 48609 GGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGGT 48668 ||| || || ||||| ||||| || || | ||||| ||| | | || ||| Sbjct 239 GGT-GCTTCA--GGATCATTGGATGCTTCTAACATGTTTAAACCAGCATTAGCGCGAGGT 183 Query 48669 GATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAGAT 48728 || || | | || || |||||||||| || || | | | || |||| ||||| ||| Sbjct 182 GAAATGCAAGCGATTGGAGCAACAACTTTGGATGAGTTTAGACAACACATCGAAAAGGAT 123 Query 48729 GCTGCATT 48736 | ||| || Sbjct 122 GGTGCTTT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104910207981824