Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq59553 91.5 2e-13 seq3142 89.7 8e-13 seq65074 86.0 9e-12 seq104435 84.2 3e-11 >seq59553 Length=7800 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 198942 TAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGTCCAGTA 199001 ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 3098 TAGCTCAGTTGGTTAGAGCAGTGGACTCATAATCCATTGGTCCCTGGTTCGAGTCCAGGC 3039 Query 199002 GGGGCCACCA 199011 ||| |||||| Sbjct 3038 GGGCCCACCA 3029 >seq3142 Length=348 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||||||||||||||| |||||||||| ||||||||| ||| ||||| || |||||| Sbjct 239 TCGGTGATTAGCGCAGCTTGGTAGCGCACTTGGTTTGGGTCCAAGGGGTCGCAAGTTCGA 298 Query 199840 GTCCTGTATCACCGACCACTT 199860 || || |||||||||||||| Sbjct 299 ATCTTGCATCACCGACCACTT 319 >seq65074 Length=2491 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAGT-TGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| | |||||||| ||||||||| |||||||||||||||||||||| ||||||||| Sbjct 102 TCGGAGCGTAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCAGGTTCGA 43 Query 199840 GTCCTGTATCACCGACCAC 199858 ||||| | |||||||| Sbjct 42 ATCCTGCCGCTCCGACCAC 24 >seq104435 Length=401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 || ||| |||||||||||||||||||| ||||||||||||||| |||| |||||||| Sbjct 81 GGGCCCATAGCTCAGTTGGTTAGAGCATCCGACTCATAATCGGCAGGTCGAAGGTTCGAG 22 Query 198995 TCCAGTAGGGGCCACCAGATA 199015 ||| ||| |||||| ||| Sbjct 21 TCCTTCTGGGCCCACCATATA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740437966165760