Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq60379 212 2e-50 seq59718 109 2e-19 seq19780 84.2 7e-12 seq18903 84.2 7e-12 >seq60379 Length=4852 Score = 212 bits (234), Expect = 2e-50 Identities = 381/557 (68%), Gaps = 0/557 (0%) Strand=Plus/Minus Query 45473 GAAAACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGT 45532 ||||||||| || || | |||||||| || ||||| ||| || || || |||| | Sbjct 2026 GAAAACGGCACCGATAAGGGCGATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCAT 1967 Query 45533 CAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATC 45592 ||| |||| || | ||| || || || ||||||||||| ||||||||| | ||| | Sbjct 1966 CAGATGCGTTTCGATTTGAGCGAAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTG 1907 Query 45593 CGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTG 45652 || ||||| || || || | ||||| | |||||||| ||| || ||| | Sbjct 1906 CGGTCGATTATCATCGAGCTTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTC 1847 Query 45653 CAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCA 45712 | || ||||| ||| |||||||||| || |||||||||||||| |||||||| || || Sbjct 1846 AAAGAAAATGGCGTGTCGATTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCG 1787 Query 45713 ATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATT 45772 | ||||| || ||||| || ||| || | | || || | || ||||| || ||| Sbjct 1786 GTATACGGATATCAGTGGCGCTCATGGCCAGCGCCAGATGGAACAAGTGTCGATCAGATT 1727 Query 45773 GCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCG 45832 | | || | | |||||| ||| ||||| ||||| || ||||||| || Sbjct 1726 GAAAAACTTGTTGATGGTATCAAGAACAATCCGAATTCGCGCCGCCACATTGTGAGTGCT 1667 Query 45833 TGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTT 45892 |||||| || | | | || ||| ||||| |||||||||| ||||||||| Sbjct 1666 TGGAACCCTGCTCTGGTAGACGAGATGGCTTTGCCGCCATGTCATTGTCTGTTTCAGTTT 1607 Query 45893 TACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTA 45952 || |||||| | ||| | | |||||| | | |||||||| | |||| ||| || Sbjct 1606 TATGTCGCGGACGGCAAGCTTTCATGCCAGCTCTATCAGCGTTCGGCGGATATCTTTTTA 1547 Query 45953 GGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGC 46012 || |||| || || ||||| ||||||||| | || || ||| |||| || || Sbjct 1546 GGTGTGCCATTCAATATCGCGTCCTATGCGCTTCTTACGCACATGATTGCACAGGTGTGT 1487 Query 46013 GACCTCGATGTCGGCGA 46029 ||||| || || || || Sbjct 1486 GACCTTGAGGTGGGTGA 1470 >seq59718 Length=6799 Score = 109 bits (120), Expect = 2e-19 Identities = 210/310 (68%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 45430 GAAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAA 45489 ||||| ||||| ||||||| ||||| | || |||| | || ||||| | | || Sbjct 2318 GAAAATAATGAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGAACGAACAA 2259 Query 45490 AGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTT 45549 ||||||||| || |||||||| || ||||| || ||| || |||| ||| | || Sbjct 2258 AGAAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTT 2199 Query 45550 GCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGA 45609 | | || || || ||| | || |||||||||||||| | | ||||| ||| | || Sbjct 2198 GAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGA 2139 Query 45610 ACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGAC 45669 ||| | ||||| || ||||||| || || | ||| | | ||| | || | Sbjct 2138 ACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAA 2079 Query 45670 GATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATG 45729 ||||||||||| ||||| |||||| | || | || || || | ||||| ||||| Sbjct 2078 AATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATG 2019 Query 45730 GCGGTCGTGG 45739 | | || ||| Sbjct 2018 GAGATCTTGG 2009 >seq19780 Length=279 Score = 84.2 bits (92), Expect = 7e-12 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 45570 TGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAG 45629 |||| ||||| || |||| | ||||| ||||| |||| |||| ||||| | | Sbjct 274 TGACAACGAAGAAACTGCACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCG 215 Query 45630 GCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCG 45689 ||||||| || | | || | ||||| |||||||| ||| | || ||||| | Sbjct 214 GCGATACCAACATCAAGTGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAG 155 Query 45690 ATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTG 45749 |||| ||||| ||||||||||| |||| || || |||||||| ||| | || Sbjct 154 ATGAGAACGGTGATCTCGGCCCGGTCTATGGTCACCAGTGGCGGTCATGGCCGGCACGTG 95 Query 45750 ACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACT 45809 |||| | ||| ||||||| ||| | | || || || |||| | | || ||| Sbjct 94 ACGGCACAACCATCGACCAGATTTCAGGCGTGGTTGAGCGTATCAGGAAAACACCTGACT 35 Query 45810 CGCGGCGGTTGCTTGTGAGCGCGTGGAAC 45838 |||| || || | |||| || |||||| Sbjct 34 CGCGTCGCCTGATCGTGACGGCCTGGAAC 6 >seq18903 Length=282 Score = 84.2 bits (92), Expect = 7e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || ||||| ||||| || || |||||||||||||| | |||| |||| ||| || || Sbjct 174 GACCGGACCGGAACCGGGACTTTGTCGGTGTTCGGTCATCAGATGCGGTTTGACCTGGCA 233 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCA 45602 |||||||||||| | |||| ||||| || |||| | ||||| |||| Sbjct 234 GACGGATTCCCGGTGCTGACAACGAAGAAACTGCACCTTCGCTCCATCA 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157545927086528