Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq59553 91.5 2e-13 seq9867 84.2 2e-11 >seq59553 Length=7800 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 74897 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 74956 ||| ||||||| || ||||| | ||||||| ||||||| ||||||||||| ||||||| Sbjct 3024 TAAATTGGTGGGCCCGCCTGGACTCGAACCAGGGACCAATGGATTATGAGTCCACTGCTC 3083 Query 74957 TAACCATCTGAGCTAAAGGGCCT 74979 |||||| |||||||| ||| ||| Sbjct 3084 TAACCAACTGAGCTACAGGCCCT 3106 >seq9867 Length=315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 74916 GGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAACCATCTGAGCTAAAGG 74975 ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| || Sbjct 121 GGACTTGAACCTTCGACCAATCGATTATGAGTCGACTGCTCTAACCAGCTGAGCTATGGG 180 Query 74976 GCCTTT 74981 ||||| Sbjct 181 CCCTTT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539323941044480