Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq59983 96.9 1e-15 >seq59983 Length=5794 Score = 96.9 bits (106), Expect = 1e-15 Identities = 215/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 9696 ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGC 9755 |||||| || |||||||| || |||| || ||| | ||| |||||| ||| || Sbjct 34 ATGGCAGGTGTAAACAAAGTAATTATCGTTGGTAATTTGGGTAACGACCCAGAAGTTCGT 93 Query 9756 TATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAG 9815 ||| | ||||| ||| || | |||||| || | || || | || || || Sbjct 94 TATTCGAACAACGGCGCCGCGATTGCAAACATCAGCGTAGCAACATCGGAAAATTGGAAA 153 Query 9816 GACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGC 9875 ||||| || |||||| | |||| ||||||||||| | || |||| ||| Sbjct 154 GACAAGAACACCGGCGAGCGCCAAGAGCGCACCGAGTGGCATAGAATCACCTTGTTCAAT 213 Query 9876 CGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGG 9935 ||||| | ||| | | || |||| |||| |||||| || |||||||||||| || Sbjct 214 CGCCTTGGCGAAGTGGCCGGCGAGTACCTTAAAAAGGGCTCAAAGGTCTACATCGAAGGC 273 Query 9936 CGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATC 9995 | |||| || || |||||||||| || | ||||| ||| | ||||| || Sbjct 274 AAGTTACAAACCCGAAAATGGCAGGATCCGCAGGGTAATGATCGTTACTCAACCGATATT 333 Query 9996 GTCGCCGACAAGATGCAGATGCT 10018 | |||||| | ||||| ||||| Sbjct 334 ATTGCCGACCAAATGCAAATGCT 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201053783888736