Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq59718 156 7e-33 seq19780 132 7e-26 seq60379 104 4e-17 >seq59718 Length=6799 Score = 156 bits (172), Expect = 7e-33 Identities = 213/295 (72%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAA-AAAGCAGA 122421 ||||| ||||||| |||||| | | || ||| |||||||| ||||| |||| ||| Sbjct 2311 ATGAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGA-ACGAACAAAGAAGA 2253 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 || || || || || || ||| | || ||| |||||||| ||||| || | | Sbjct 2252 TCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGAACGA 2193 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 |||||| ||| |||| || |||||| | ||| | | || || || || || || | Sbjct 2192 AGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAACTCTT 2133 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 |||||| | ||||| ||||||||| ||||||| ||||| ||||||||| || || Sbjct 2132 ATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAATTTG 2073 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 ||| |||||||| ||||||||||| || || || || || ||||| | |||||| Sbjct 2072 GGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGG 2018 >seq19780 Length=279 Score = 132 bits (146), Expect = 7e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 122513 CACCTCCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAG 122572 ||||| |||||||||||| ||| | ||||||||||| ||||||||||||||| || Sbjct 257 CACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGCGATACCAACATCAAG 198 Query 122573 TATCTGAAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTC 122632 | ||||| || ||||| || | |||||| |||||||||||||||| | ||| ||||| Sbjct 197 TGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGATGAGAACGGTGATCTC 138 Query 122633 GGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||| || ||| | || ||||| Sbjct 137 GGCCCGGTCTATGGTCACCAGTGGCG 112 >seq60379 Length=4852 Score = 104 bits (114), Expect = 4e-17 Identities = 210/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGA-CTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAG 122420 |||| |||||||||| || |||| || | | || || ||||| ||| || | | Sbjct 2063 CATGCAACAATATCTCGATCTTA-TGTCTCATGTAATGGAAAACGGCACCGATAAGGGCG 2005 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 | || || || || || || | || | || ||| || ||||| || || || Sbjct 2004 ATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGATTTGAGCG 1945 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 ||||||| ||||| || || || |||||| |||| | || || || ||| |||||| Sbjct 1944 AAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTGCGGTCGATTATCATCGAGCTTT 1885 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | |||||||| ||||||||||| || | || ||||| || ||| || | Sbjct 1884 TATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGTGTCGATTT 1825 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTG 122660 ||||||| ||||| |||||| |||| |||| || ||||| ||||| | || ||||| Sbjct 1824 GGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATATCAGTGGCGCT 1765 Query 122661 AGTGGCCAG 122669 ||||||| Sbjct 1764 CATGGCCAG 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776570998899200