Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq108602 132 4e-26 seq44811 113 4e-20 seq97248 102 7e-17 >seq108602 Length=371 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| || |||| || Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || || || ||||||||| | || ||| || Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||||||||||||| || |||||||| ||||| || |||| | | |||||||| Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||||||||||||| || |||| | ||| | ||||||| Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGG 121 >seq44811 Length=222 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| ||| | || ||||||||| |||||||||||||| || || ||||||||| Sbjct 180 GACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAA 121 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || || |||| | |||| || |||||||| || ||||||||||| ||| |||| | Sbjct 120 GACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCACTTGGTCCTC 61 Query 28767 AGATTACGAGGAGGGAT 28783 ||| | ||||||| || Sbjct 60 AGACTTAGAGGAGGAAT 44 >seq97248 Length=461 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| |||||||| || ||||| || ||||| ||||| || |||||| || || | Sbjct 179 AAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCA 238 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | | | ||||| || || |||||||| || | || ||| Sbjct 239 ATCAGATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGA 298 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||||||| | ||||| || || || ||||| |||||| | ||| | | ||||| Sbjct 299 TCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTA 358 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || ||||| || |||| | ||| | ||||||| || Sbjct 359 CAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGAAT 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424838888248608