Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq76544 91.5 1e-13 >seq76544 Length=1222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 173/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 130790 TTAGTTGTAGGCACAGGTAACAAAGTAGAAGATTTTGGTGTAGGTTTCTATACTAAGTAT 130849 || || | ||| || || || ||| | |||||||| || | ||||||| |||||| ||| Sbjct 543 TTGGTGGCAGGAACGGGCAATAAAATTGAAGATTTCGGAATTGGTTTCTTTACTAAATAT 602 Query 130850 GGTGATGGTGGTGTTGATATATCACCTATTGCAGATTGTATGAAAACAGATGTATGGAAA 130909 || || || || ||||| | ||||||||||| | | || || || || ||| Sbjct 603 GGCGACGGAGGCGTTGACCTTAGTCCTATTGCAGACTTAAATAAGACGGACGTTTGGGCT 662 Query 130910 ATTGCAAAAGAATTAAATAT-ATT-AC--AATCAATACAAGAGGCAAAACCAACAGATGG 130965 || |||||||| | | | ||| || ||| | | || ||||||||||| || || Sbjct 663 GTTTCAAAAGAAGTTGGTGTCATTGACGAAATAATTTCA----GCAAAACCAACCGACGG 718 Query 130966 TTTATGGGACGATGGAAGAACAGATGAAGACCAACTTGGTATGAGTTACGAAGAATTAGA 131025 | ||||| ||||| ||| || ||||| ||| | || |||||| ||||||||| Sbjct 719 ACTTTGGGAAGATGGTCGAAGTGACGAAGATCAAATCGGAGCGAGTTATCCAGAATTAGA 778 Query 131026 AAAAGCAATGA 131036 | ||||||| Sbjct 779 ATGGGCAATGA 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470537920916480