Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq76311 192 1e-44 seq87463 116 9e-22 >seq76311 Length=1237 Score = 192 bits (212), Expect = 1e-44 Identities = 366/533 (69%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 30865 TTCGACCCGATCACCCGGATCGCATCGCGGATCGCGCGCATCGCCTCCTGCCAGCGCGGG 30924 || || ||| | || || || || |||||||| || ||| || | ||||||| || Sbjct 290 TTGGAGCCGGTTACACGCATTGCGTCGCGGATTGCATCCATGGCTTTGAGCCAGCGTGGA 349 Query 30925 TCCTCGATCTCGAGGCGCAGCAGCATGAAGACTTCGGAGCGGTTGATCTGGCCTTCCTTG 30984 || ||||| ||| |||| ||||||||||| ||| || |||||||| |||||||| Sbjct 350 TCTTCGATTGAGAGCCGCATCAGCATGAAGATTTCAGATTTGTTGATCTTGCCTTCCTGA 409 Query 30985 TCGGTGTTGAAGGCGCGCGTGACGATCGCACGGATCTCGGGACGGCTGTCGGCCGCCCAT 31044 ||||| |||||||||||||||||||| | ||||| | ||| |||||| | |||| Sbjct 410 TCGGTATTGAAGGCGCGCGTGACGATGGTTCGGATTTTCGGATCGCTGTCCTCGCTCCAT 469 Query 31045 TCGTTCAGACACTCGTCGATCAGTCCCTTCGCAACCTGCAGCTCGGGGCCGAAGGTCAGC 31104 |||||||| |||||||| ||||| | || |||| || |||| || ||||| ||| Sbjct 470 TCGTTCAGGCACTCGTCAATCAGCTCTTTGGCAATTTGGAGCTGCGGCCCGAA-ATCAAT 528 Query 31105 A-GATCGGAGACGCGAACCTCGATCTTGAAGAGGCCGTCATGGGTCAAGTAGGTCTTGTT 31163 | | |||| || | ||| | || | || |||||| | | || || ||| Sbjct 529 ACGCTCGGCAACTTGCACCGACACTTTCATTAGCCCGTCAAATGACTGATAAGTGCGGTT 588 Query 31164 GCCCTTCGCGCCGCCGATCTTGAGACCATATTCCTGGGCGAGCATCGCATCGAGATCTCC 31223 ||| ||| || || | | |||||||||||| | ||||| |||||| | | Sbjct 589 GCCTTTCTTACCACCTTTGCCAACACCATATTCCTGTTCAAGCATACCATCGACGCCATC 648 Query 31224 GAGATCGTCGAAGGTATGCCCCTTGAACCGCGCGACCTGGTCACTG--AGCGCCAGCGCA 31281 | ||| | | ||||| ||| || || | || | ||| || ||||| ||| Sbjct 649 TAAATCAGCCATGGTATTGATACGGAAGCG-GCTA-ATGTCCGCTGACAGTGCCAGTGCA 706 Query 31282 AATCCGAAGATCTTGCGCACCTGCTCGTCGATCAGCTTGTCGGCCGGCTTGATGAGGTCG 31341 || | | || |||||||| ||||| || |||||||||| |||||||||||| ||| Sbjct 707 AAAGCCATAATTTTGCGCACTTGCTCATCTTCGAGCTTGTCGGTCGGCTTGATGAGATCG 766 Query 31342 ACAGGTTTCAGCCCGCCCTTGGCATCGTGCATGTAGGGCTTGCCATCGACCTC 31394 || || || ||||||||||||| ||| | ||| |||||| ||| || Sbjct 767 ACGGGCACGAGGTGGCCCTTGGCATCGGCCATATGCGGCCTGCCATTGACGTC 819 >seq87463 Length=684 Score = 116 bits (128), Expect = 9e-22 Identities = 211/303 (70%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 14076 TGCTTGGAGCCGTAGGCCATTTGCCAGAACCCGAAGCCGACATTGGCGCGGGCATCCGTG 14135 || || || ||| | |||| |||||||| || |||||||||||||| ||| |||| Sbjct 144 TGTTTTGAACCGAACGCCAACTGCCAGAAGCCAAAGCCGACATTGGCACGGCCATCAAGA 203 Query 14136 CCATAGAGGAATTCCTTGTTCATGAAGACGTGGTCATCAT-CGAGCTTGGTCTTCGAG-A 14193 || ||||| | | ||| ||||||||||||| ||||||| || ||| ||||| | | | Sbjct 204 CCGTAGAGATACTTCTTCTTCATGAAGACGTTCTCATCATCCGGGCT--GTCTTTGCGCA 261 Query 14194 CGA-ACTG--GAAGTCCCGGCGCTTCTGCAGGATGATCGGCTTGAGCGCCCGCGTGGTGT 14250 | | | || |||| ||||| ||| |||||||||||||| || |||| | Sbjct 262 CCAGATTGCCGAAGGATTTGCGCTCCTGATAAATGATCGGCTTGAGTGCGCGCGATACAT 321 Query 14251 CGAGCAGGAACCAGGGCGTCCCCGTGCCGCCACCGGTATTCGAGACGGTGACAGTCTTCC 14310 | || |||||||| ||||| || | ||||| || | ||| || || | | | | Sbjct 322 CCAGAAGGAACCAAGGCGTACCGGAACCGCCGCCTGCATTGGATACTGATTGCGGATCAC 381 Query 14311 CGTCCTCGTCGAGCACGGGGTGATCGGTGTCGAAGAAGTTCTGACCGTCATAGCACTCGG 14370 ||| ||| || | || ||||||||||| ||||||| ||| || ||| | || | | Sbjct 382 CGTTCTCATCCAAGACCACATGATCGGTGTCAAAGAAGTACTGGCCATCAAAACATTTTG 441 Query 14371 TCG 14373 ||| Sbjct 442 TCG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126348017675840