Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq81249 91.5 4e-14 seq59475 86.0 2e-12 >seq81249 Length=935 Score = 91.5 bits (100), Expect = 4e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 13039 AGAGTTTAATTGTCCAGTTATCGCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGACC 13098 |||||||||||| || ||||||||||| |||||||||| |||| ||||||| ||||| Sbjct 611 AGAGTTTAATTGCCCTGTTATCGCACTATCACAGCTTAGTCGTAATCTAGAGAGTCGACC 552 Query 13099 AAACAAACGGCCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGA 13158 ||||||||||| || | || | || || || || |||||| | | || || Sbjct 551 CAACAAACGGCCTATTAATTCTGATTTGCGTGAATCTGGTGCGATTGAGCAGGATGCCGA 492 Query 13159 CGTGATTATGTTCCTGTACCGCGATGAGGTTTATAACGAA 13198 || ||| | || | || || ||||| || || |||||| Sbjct 491 TGTTATTGTCTTTATCTATCGAGATGAAGTGTACAACGAA 452 >seq59475 Length=8474 Score = 86.0 bits (94), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 13023 TTAAACGGT-TCGGTAAAGAGTTTAATTGTCCAGTTATCGCACTGTCACAGCTTAACCGT 13081 ||||| ||| | | |||||||| | || || ||||||| || |||||||| || || Sbjct 7336 TTAAAGGGTCTAGCGAAAGAGTTAGAGTGCCCTGTTATCGTGCTCTCACAGCTCAATCGA 7395 Query 13082 AGCTTAGAGAGCCGACCAAACAAACGGCCCATCATGAGCGACCTAAAAGAGTCAGGGGCC 13141 ||| ||||| || |||||||||||||| | ||| || || ||||| || || Sbjct 7396 AGCCTAGAGCAACGGCCAAACAAACGGCCAGTGATGTCTGATCTTCGTGAGTCTGGTGCG 7455 Query 13142 ATTGAGGAAAACGCTGACGTGATTATGTTCCTGTACCGCGATGAGGTTTATAACGAAAAC 13201 |||||| || |||| || | || ||||| | || || |||| || || | || Sbjct 7456 ATTGAGCAAGACGCCGATATCATCATGTTTATTTATCGTCATGAAGTCTACGAGCCGGAC 7515 Query 13202 TCGGACCAAAAAGGTATTG 13220 | || ||||||||||||| Sbjct 7516 ACCGATCAAAAAGGTATTG 7534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130278915911360