Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq59922 230 1e-55 seq64137 172 3e-38 seq18475 136 2e-27 >seq59922 Length=6033 Score = 230 bits (254), Expect = 1e-55 Identities = 340/479 (71%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | |||| ||| || |||||| | || | ||| ||||||||||||| | Sbjct 2309 GGACACATTAAAGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATAAATCTGGAACC 2250 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 |||| || |||||||||||||| ||||| |||||||| |||||||| || || | Sbjct 2249 CACAAAGCGTAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAG 2190 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 |||||||| ||||| | ||| | ||||| || || || || || || ||| |||||| Sbjct 2189 TCTAAGAAGTCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTA 2130 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 | ||||||||||||||||||||||||||| ||||| || || || ||| | ||||||||| Sbjct 2129 CGTTTTCCTCCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGA 2070 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 || | || | ||| |||||||| | | || | || ||||||| | || | | Sbjct 2069 ACGATACCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCTGTCGCACGGATGTTG 2010 Query 26192 TG---AGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACT 26248 || ||| ||| || ||||||||||| ||| || || ||||| | | | | Sbjct 2009 TGCATAGC--CAAT-CCAATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAAT 1953 Query 26249 GTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAAT 26308 || || ||||||||| || ||||| | |||||| ||| | |||||||| || | | Sbjct 1952 GTGTCATAAATTCCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAGATGACATT 1893 Query 26309 TGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 || | | | ||||| || ||||| || || ||||| || || || | ||||||| Sbjct 1892 TGTGGTTTTGGCGTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTC 1834 Score = 158 bits (174), Expect = 6e-34 Identities = 495/752 (66%), Gaps = 16/752 (2%) Strand=Plus/Minus Query 24685 TGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAA 24744 ||||| ||| |||| | ||||||||||| ||||||||| || | ||| ||||| || Sbjct 3483 TGCTGCTTTCGTTCGCAAGTAATACATTCCCGTTTTCAATCCTTTTTCCCATCCGTAGAA 3424 Query 24745 ATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGC 24804 ||||| || || ||||| | | |||||| ||| | || | |||| ||||||| Sbjct 3423 GTGCATAGACGTCAGTTTCCCGAAGTTTGCATTTTCCATGAAAATATTCAATGATTGAGA 3364 Query 24805 TTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATC 24864 ||| |||| || |||||| |||||| || || |||| ||| ||| || || Sbjct 3363 TTGACAAATGTAAGCCCCTCTATCCGCAGCTTGATCGATAATCGCTTTTTGCGAAATCTC 3304 Query 24865 GTAAGCTGTTTTGTATCTCTCTTTTATCTCAGT-TGGAATACTTGCAATATTTTGAACTG 24923 | ||||||||||| ||||| | || | ||||| | | || ||||| | | Sbjct 3303 CCATGCTGTTTTGTAAAGATCTTTAAG-TCGTTGTGGAACGTTATCTATGTTTTGGATAG 3245 Query 24924 ATCCATTTTCTCTCAATAG-ATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTTT-C 24981 |||| || || ||| | || | | | ||| ||| ||| | | || | ||| | Sbjct 3244 ATCCGTTAGCTGTCATAATCATACGA-CGCAT-TTCTTTGTTCCACAATCCTTCTTTAAC 3187 Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTAT 25041 |||||| | | ||||| || || | ||| || || || || ||||| || | |||| | Sbjct 3186 TAGATCTTTCAATAAGTGCTTGTTAACGATGATGAACTCACCTGACAACACACGTCTTGT 3127 Query 25042 TGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGA 25101 | | ||||||||| ||||||| |||||||| || ||||| | |||||||| || || Sbjct 3126 ATAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGTTTCCAAGGATTTGAGCTGTTGA 3067 Query 25102 TGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTG 25161 |||||||||||| ||| | ||| | || || | || ||| | | | | ||| Sbjct 3066 AGCTGTTGGCATTGGTGCCAATAACAATGAGTTACGCACACCGTGCTCCATCACTTCTGC 3007 Query 25162 TTTTAATTTATCCCAATCTAAATTATTATCTAACTCGA-TATCGTTATCATATAAATCAA 25220 ||| ||| ||||| || || || | || || | || || || ||| | Sbjct 3006 TTTCAATACGTCCCATTC----CCATCTGCTTGTTGGAGTAACATT-CCACAT--ATCGA 2954 Query 25221 ATTGTAACAATCCACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTA 25280 |||| || || ||| | |||||| ||| ||| | ||| || | | Sbjct 2953 ATTGGAATTGACCTTTTGAAACTGGCGATCCTTCATAAGATTGGTATGGTCCATCAACTT 2894 Query 25281 TTGCCATATCTTTTGATTGCTCT-AACGCAGCATAATACATATTTTCAAAAATCGCTTTG 25339 | || | |||||| || ||| | | | ||| |||||||| ||||||||| || || Sbjct 2893 TAGCTAAATCTTTAGA-TGCAGTCATTGAAGCGTAATACATTGTTTCAAAAACTTCTCTG 2835 Query 25340 TTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCGAACGTATCTGCT 25399 || || | |||| |||| || || | | | |||||||| ||| | ||||||| Sbjct 2834 TTCAATGCTCTTGCTTCTTCTGATTCAAATGGCAATCCCATTAAGATGAAAGCATCTGCT 2775 Query 25400 AATCCCTGAACTCCTAATCCAACTGGACGATG 25431 || || ||||| |||||||||| |||||| || Sbjct 2774 AACCCTTGAACACCTAATCCAATTGGACGGTG 2743 >seq64137 Length=2701 Score = 172 bits (190), Expect = 3e-38 Identities = 321/469 (68%), Gaps = 2/469 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||||||||| | ||| || ||| || ||| || ||| |||| ||| Sbjct 1225 ATTTGGACAGAAGAGTGTCCAGTCTTCATCAGCTTCTACTCTCCTCATGAATATATCACT 1166 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||||| || || || | ||||| |||||| ||| ||||| || || ||||| | Sbjct 1165 AACCCACAAAGCGTAGAAGAGGTCTCTTGCTCTCTGTTCATCTTTACCATGGTTCTTCCT 1106 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | | | ||| ||| ||||||||| ||||||||||| | |||||||| ||| || Sbjct 1105 CAAGTTAAGGAAGTCATAAATATCTGGATGCCATGGTTCGAGGTAGATAGCGAAAGCTCC 1046 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||||| || || || ||||| || || ||||||||||| |||||||| || | | ||| Sbjct 1045 CTTTCTCTTACCGCCTCCTTGGTCAACATATCTTGCAGTGTCATTGAAGACCCTAAGCAT 986 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGC-TATGAATCTTGGATCCTGTCGATCTAA 26186 ||| || | |||| |||| |||||||| | | ||| | | ||| || ||||||| Sbjct 985 TGGGACAAGTCCATTTGAGTGACCGTTTGTTCCTCTGA-TGTAGGAAGAAGTTGATCTAA 927 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 || |||| || | || ||||| ||||| || || ||| ||||| | | | Sbjct 926 TACAGTGAACAGCCAATCCAATTCCTCCAGCATTCTTAGAGATAATAGCACATTGTTGTA 867 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||| ||||||||||||| || |||| | |||| |||||||||| || ||| | Sbjct 866 ATGTTTCGAAAATTCCTTCAATTGAATCATCCCGCATTGCTAATAAAAAGCATGAACTCA 807 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGT 26355 ||| | | | || || | |||||| | || ||||| || || || Sbjct 806 TTTGTGGTTTTGGGGTACCAGCATTAAAGAGGGTTGGTGTGGCGTGTGT 758 >seq18475 Length=282 Score = 136 bits (150), Expect = 2e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| ||||||||||| |||||||| | ||||| || ||||||||||| || Sbjct 141 CATGAATAAATCCGGAATCCACATAGCATAAAAAAGGTCTCTGGCCCTCATTTCTTCCTT 200 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 |||||||| ||||| ||||| | |||||| | || || | |||||||| || | ||| Sbjct 201 ACCGTGATTTTTTTTCAGATCCAGAAAATCATATATGTCCGCATGCCATGGCTCCACATA 260 Query 26053 GATAGCAAAACTACCTTT 26070 ||||||||||||||| || Sbjct 261 GATAGCAAAACTACCCTT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252703383418400