Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq60385 196 6e-45 seq61999 150 2e-31 seq59785 150 2e-31 seq70615 102 9e-17 seq55198 96.9 4e-15 >seq60385 Length=4838 Score = 196 bits (216), Expect = 6e-45 Identities = 465/693 (67%), Gaps = 20/693 (3%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||||| || || || || ||||| || || | ||| ||||| || || ||||| Sbjct 493 AATGGTGCAAGGTGGCTTTTAACGCCAATTGGCCCCATGCCCGGACCACCGCCGCCATGC 552 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||| ||||| || || || ||||| | ||||| ||||| | ||| |||| ||| Sbjct 553 GGAATGCAGAAAGTTTTGTGCAAATTCAAATGACTGACATCAGAACCGATTTCACCCGGT 612 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| | ||| ||| ||||| | ||||||||||| | ||| ||||| || ||| Sbjct 613 TTTGCCAAACCGACCATGGCATTCAAGTTTGCACCATCCAAATAGACCTGTCCGCCAAAC 672 Query 138342 TCATGAACGATCTTACATATCTGTCTGA-TGTTTGTTTCAAATACACCATGAGTCGATGG 138400 ||||| ||| | || || | | | ||||| |||||| |||||||| || || || Sbjct 673 TCATGGGTGATATCGCAAATATCGCGCACTGTTT-CTTCAAAAACACCATGGGTTGAGGG 731 Query 138401 ATATGTAATCATAATACATGAGAGT--TCAAATGTATTCA-TGATTGCTTTCTTCTCTAG 138457 |||||| ||| ||||||| | | || | | | || | ||||||| | | Sbjct 732 ATATGTGATC---ATACATGCGGCTAATCGATCGCCTGCAGCGTTTGCTTTTTGGCGAAA 788 Query 138458 ATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGC 138517 ||||| || || || | ||| | ||| || |||| | | | ||||||| ||| ||||| Sbjct 789 ATCTTCAATATCAATATCGCCGTTTTCAGCAGACTTTATAACGACAACTTCCATGCCTGC 848 Query 138518 CATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTC- 138576 ||| || ||||| || || |||||||| || |||| || || || ||||||| Sbjct 849 CATTTGGGCGGACGCAGGGTTGGTGCCATGTGCAGAAACTGGAATGAGGCAAACATTTCG 908 Query 138577 --TTTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTC 138634 | | |||| | | ||| | | |||||||| | |||| | || |||||||| || Sbjct 909 CTTCTGATCACCGCGTGAAC---GGTGATATGCACGAATTGTCAGAAGGCCTGCATATTC 965 Query 138635 ACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAA 138694 ||||||| || | ||| || || | || || | ||| | ||||| || || || Sbjct 966 GCCCTGTGCGCCAGAGTTTGGCTGCATAGACATCGCGTCATAGCCTGTAATCATGCACAA 1025 Query 138695 CCATTTCTGTAAGTCATCTATTATCTTTTGA---TAACCCATGGTCTGTATCATAGGTGT 138751 | | | | ||| ||| | | | ||| | || || |||| | |||| Sbjct 1026 -CTTGGCAGAAAG--ATCGGTCAGCATTTCATTGTAGCCTTCAACCTGTTCGCTTGGTGC 1082 Query 138752 ATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATT 138811 || ||||| | |||| |||||| ||||| | |||||||| ||| || |||| || Sbjct 1083 ATAGGGATGAAGATTGGAAAATTCAGGCCATGTTATAGGCATCATTTCCGCAGCTGAGTT 1142 Query 138812 TAGTTTCATTGTGCAACTACCAAGTGGAACCAT 138844 |||||||| |||||| |||||| |||| ||| Sbjct 1143 AAGTTTCATGGTGCAAGAACCAAGCGGAATCAT 1175 >seq61999 Length=3424 Score = 150 bits (166), Expect = 2e-31 Identities = 486/735 (66%), Gaps = 17/735 (2%) Strand=Plus/Plus Query 138182 TACACCA-ATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTAT 138240 |||| || ||||| || | || ||||| ||||||||||||||||| ||| || || | Sbjct 992 TACAACAGATAGGCCCCATTCCTGGACCACCACCTCCATGTGGAATTGTGAAAGTTTTGT 1051 Query 138241 GTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 |||| || | |||||| |||||| | || || | || || | |||| | | | Sbjct 1052 GTAAGTTCAAATGACACACATCTCCCCCAATTTTTGCA-GGGGAAGTGTGACCCATCATT 1110 Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT 138359 || || | ||| |||||||| | ||| || |||||||| | ||| | | | | Sbjct 1111 GCGTTCATATTAGCACCATCAATATAAACTCTTCCACCATTTTTATGGATAGTTTCAGTA 1170 Query 138360 ATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 || | | || ||| |||||| || || ||||| ||||| || || |||||| |||| Sbjct 1171 ATTTCTAAAATCTTTTCTTCAAAGACTCCGTGAGTGGATGGGTAAGTGATCATAGTACAA 1230 Query 138420 GAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA 138479 || || | | | ||| | | | ||||| | ||||||| | || | || ||| Sbjct 1231 GAAAGATTATCTTTATGCTTCAAGGCTTTAGCTTTAAGATCTTCAACATCAACATTTCCA 1290 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | ||||| | | || ||| | ||||||||| | | ||| ||||| ||| Sbjct 1291 TTTTCATCTGAATCTACCGGTACGATTTTCATTCCACAAAGCATTGCTGATGCAGGGTTA 1350 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCC-TGATCCT-- 138596 || ||||| ||||| | ||| || | ||| | |||||| | | | || || | ||| Sbjct 1351 GTACCATGAGCTGATTTTGGAATTAAACAGATATTTCTATGACCTTCACCATTGGCCTTG 1410 Query 138597 TGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 ||| ||| | || || | || ||||| |||||||| || || | ||| |||||| Sbjct 1411 TGAAGAT-TTCT--AATAGTTAGAAGTCCGGCATACTCTCCTTGAGCTCCACTATTAGGT 1467 Query 138657 TGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAG-TCATCTAT 138715 || | || |||| || || || ||||| | ||||| || | ||| ||||| || Sbjct 1468 TGGATAGAGATAGCTTCGAATCCGGTGATCT-TCATAAGGTAATCAGAAAGTTCATCGAT 1526 Query 138716 TATCTTTTGATAACCCATGGTCT-GTATCATAGGTGTATGTGGATGCACGTTGGCAAATT 138774 || | || ||||| || | || | | ||||| | |||||| | || |||||| Sbjct 1527 CATTTGTTTGTAACCTTCAGTTTGGTGTGA-AGGTGCAAATGGATGAATATTTCCAAATT 1585 Query 138775 CTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCAA 138834 | ||| ||||| || |||| ||| | || ||||| |||||||| || ||| || | Sbjct 1586 CAGGCCAAGACACTGGGATCATTTCAACAGCAGCATTAAGTTTCATGGTACAAGATCCTA 1645 Query 138835 GTGGAACCATACCATTTACTAATGAGAA-ATCTTTA-GAGCATAACTCATAGATATATCT 138892 ||||| ||| |||| | | | || ||| ||| || || || | ||||||||| Sbjct 1646 ATGGAATCAT-GGATTTGGTTAAGCCAATATCCTTATCTGCTAAAGTC-TGGATATATCT 1703 Query 138893 CATCATGTCAGTTTC 138907 || ||| || ||||| Sbjct 1704 CAGCATATCTGTTTC 1718 Score = 132 bits (146), Expect = 6e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || ||||| | || || |||||||| | || || ||||| ||||| ||| || Sbjct 2709 CATAGCTTCTGCACCAGCTGTAGCTTCATCAAGTAAGGAAGCGTTAGCTATATCTAAGCC 2768 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | || || | |||||||||||| | |||| || |||||||| ||||| || Sbjct 2769 TGTTAAGTCACAAATCATCGTTTGGTAATTTAGTAAACTCTCTAATCTTCCTTGAGAGAT 2828 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTC 140034 ||| |||||||| |||||||||| || |||||| |||||||||||||||| |||| Sbjct 2829 CTCTGCTTGATATGGAGTGTAAGGGGTATACCAATTAGGATTCTCAAGAACATTTC 2884 Score = 105 bits (116), Expect = 8e-18 Identities = 182/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 |||||| || | |||||||| |||||||| || || || ||| | ||||||||||| Sbjct 2148 CATATTAGCTAAAAGTGCTTGAGCTGTGCAAATATTGGAAGTAGCTCTATCTCTTCTAAT 2207 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC--TTCGCTGTCCACT 139415 ||||||||||||||| || | ||| | ||| |||| ||| || | | | ||| Sbjct 2208 ATGCTGCTCTCTAGTCTGCATTGCCATTCTTAATGCTTTATTTCCATGTACATCTTTACT 2267 Query 139416 GACTGACCTACAATTCTGCCAGGTA-TCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAA 139474 |||| || | | ||| ||||| | ||| | | ||| ||| | ||| ||| ||||| Sbjct 2268 GACT--CCGATTACTCTTCCAGGCATTCTATAT-TTAATCTTATTTGTGACTGCGAAGAA 2324 Query 139475 TGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGC 139534 || ||||| || ||||| | ||||| |||| ||||| ||||| | ||| | || Sbjct 2325 AGCTGCATGTGGTCCTCCAAAGCCCATTGGAACTCCAAATCTTTGAGTTAGACCGAATGC 2384 Query 139535 AATATCAAATCCCCACTCAC 139554 |||||| |||| ||||| Sbjct 2385 AATATCTGCTCCCATCTCAC 2404 >seq59785 Length=6524 Score = 150 bits (166), Expect = 2e-31 Identities = 347/518 (67%), Gaps = 10/518 (2%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 ||| |||| || || || | || || || || || ||||| || || || || ||||| Sbjct 2699 AAACGGTGCAAGGTGCTTACCAACTCCGATTGGGCCAACGCCTGGGCCGCCTCCACCATG 2640 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 ||||||||| ||||| ||||| | ||||| ||| | || || |||| | | || || Sbjct 2639 TGGAATACAAAATGTTTTATGCAGATTTAAATGTGAGACGTCGCCACCGAACTTACCCGG 2580 Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 || |||| || || ||||| | || |||||||| | ||| || || || ||| Sbjct 2579 TTGAGCTACGCCAACTAAGGCATTCAAGTTAGCACCATCTATATAGACTTGGCCCCCAGC 2520 Query 138341 GTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 | |||| || | || ||| | || | | | | ||||| |||||||| ||||| || Sbjct 2519 GCCATGCACCAGCTCACAAACCTTGGTAACATCTTCCTCAAAAACACCATGGGTCGACGG 2460 Query 138401 ATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGA--TT---GCTTTCTTCTCT 138455 || || |||||||| | || | | || | ||| || ||| ||| | | Sbjct 2459 GTAGGTGATCATAATCGCGGCGA-TGC---TGGCTGGGTGAGCTTCGATCTTACTT-TGT 2405 Query 138456 AGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCT 138515 || |||| | ||||| ||||| || ||||||||||| ||||||| ||||| Sbjct 2404 AGGTCTTGTAGGTCTACATTGCCTCGCTCGTCACACTTGACTACTACAACCTTCATATTC 2345 Query 138516 GCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTT 138575 ||||| ||||| || || || || || || || || ||| || ||||| | || Sbjct 2344 GCCATCTGCGCACTCGCCGGGTTGGTGCCGTGCGCAGAACTTGGGATAAGACAAATATCA 2285 Query 138576 CTTTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCA 138635 | | | || ||| || || ||||| | |||||| || || |||||||||||| Sbjct 2284 CGTGCAGTGTCGCCTCTAGATTCGTGGTATGCCTTGATTGCCAATAGGCCTGCATACTCA 2225 Query 138636 CCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATC 138673 ||||| || || ||||| ||||||| || || | ||| Sbjct 2224 CCCTGAGAACCAGCGTTTGGTTGTAGCGACATGGCATC 2187 >seq70615 Length=1703 Score = 102 bits (112), Expect = 9e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || | ||| |||||||||||||| |||| ||| ||||| || | | ||| Sbjct 1178 CATTGCTTCAGATGCAGCAGTTGCTTCATCCAATAAAGAGGCGTTGGCCAACTCCATTCC 1237 Query 139919 TGT-AAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 || |||| || | | |||||| |||| || | ||||| || | ||| ||||| | Sbjct 1238 GGTTAAGTCAAGT-ACCATTGTTTGGAAATTCAAAAGCGCTTCTAAACGTCCTTGAGAAA 1296 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 |||||||||| || || || |||| || ||||| | || || || | || |||| | Sbjct 1297 TCTCAGCTTGGTACGGCGTATAAGCAGTATACCATCCTGGGTTTTCCAATACATTTCTCA 1356 Query 140038 GTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAA 140082 || |||| ||| ||| ||| ||| |||||| |||| |||| Sbjct 1357 AAATTACTGAGGGAACAATCGTTTCATTGTATCCAAGACCAATAA 1401 >seq55198 Length=204 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 138204 GGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCT 138263 || || ||||| || || |||||||||||||| || |||||||| |||||| | || || Sbjct 1 GGGCCACCACCACCGTGAGGAATACAGAATGTTTTGTGTAAATTCAGATGAGAAACGTCA 60 Query 138264 GCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGA 138323 ||||| | | | ||| | ||| || ||| ||||| || || || ||||||| | Sbjct 61 CCACCAAACTTGCCTGGCTGACATAGCCCCACCATGGCATTGAGGTTGGCGCCATCGATA 120 Query 138324 TATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAAT 138383 || ||||||||||||| | |||| || | || | | | ||| |||||| Sbjct 121 TACACCTGACCACCATGCTGGTGAATAATGTCGCAGACTTCGGTAATGCCCTCTTCAAAC 180 Query 138384 ACACCATGAGTCGATGGATATGT 138406 |||||||| || || ||||| || Sbjct 181 ACACCATGGGTTGAGGGATAGGT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578208414583040