Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq59582 306 5e-78 seq59179 215 7e-51 seq64606 158 2e-33 seq45200 93.3 6e-14 seq78207 89.7 7e-13 seq25765 89.7 7e-13 seq85905 87.8 2e-12 seq13023 86.0 8e-12 >seq59582 Length=7566 Score = 306 bits (338), Expect = 5e-78 Identities = 548/793 (69%), Gaps = 37/793 (5%) Strand=Plus/Plus Query 47761 ACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCT 47820 ||||||| | ||| || ||| || || || ||||| ||| ||||||||| || ||| Sbjct 721 ACAAACTCTCTGACGGATATTTGGTTGCCAGTAGCAATGACATAATCATCAGCTTGCTCT 780 Query 47821 TGTTGAAGCATTAACCACATAGCCT-CGA-CATAATCTCTGGCATGTCCCCAGTCACGAA 47878 || || | ||| | ||| | || | ||| | |||||| ||||||| ||||| || || | Sbjct 781 TGCTGCAACATCAGCCA--TTGCATGCGAACGTAATCTTTGGCATGCCCCCAATCTCGCA 838 Query 47879 GTGCATCAAGATTTCCTAGATATA-AACAGTCTTGCTTACCTTCAG--AGATTGCTTTTA 47935 |||| || | ||| || ||||| | ||||| || ||| | | | |||| | Sbjct 839 GTGCGTCCATATTCCCAAGATACACAACAGG-TTCTAAACCGTGTGCAATATTGGCC--A 895 Query 47936 ATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAA 47995 | |||| ||||| || || |||||||| ||||| || || | ||| || |||||||||| Sbjct 896 AGGCTCGGGTAATTTTTCGGGTTACAAACGTTTCGCCCCGACGTGGCGACTCATGATTAA 955 Query 47996 AAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTAC---TATCC 48052 | | ||||||| |||||||| |||| ||||| || |||||||| ||||| ||||| Sbjct 956 ATAAAATACCATTACAGGCAAACATGCCGTAGGACTCACGATA---ATTTACCGTTATCC 1012 Query 48053 AGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTG 48112 |||| |||| ||||| ||||| |||| || || || || || || || || || ||| Sbjct 1013 AGTAGGCATATAGTTTAGCAACCGCATATGGCGAGCGAGGGTAAAATGGCGTAGTTTCTC 1072 Query 48113 TCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAA 48172 | || || |||||||||||| ||| || | |||| ||| | |||||||||| | Sbjct 1073 TTTGCGGCGTCTCTTGCACCAAACCGTACAATTCAGAGGTCGCAGCTTGATAGAATTTAG 1132 Query 48173 CCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCAT 48232 | | ||| | | | || || || | || ||||||| | |||||| || | |||| Sbjct 1133 TTGTCTTTTCTAGCCCCAGAAACCGAATCGCTTCAAGCAGACGCAGGGTTCCCAATGCAT 1192 Query 48233 CTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAA 48292 || | | | || || || |||| |||||| || ||| |||||||| || || ||| Sbjct 1193 CTACATCAGCGGTGTATTCTGGCACCTCAAATGACACCGCCACATGACTTTGCGCAGCAA 1252 Query 48293 GATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTG 48352 | ||||| | || || || |||||| ||||| | || || || | | || Sbjct 1253 GGTTATACACTTCGTCAGGACGAACCTCTTGAATTATCCGGGTTAGGTTCGAGGTATCGC 1312 Query 48353 TTAAGTCTCCATAATGCAA-------TTTTAATT-----------GATC---ATAAATGT 48391 | ||||| || |||||||| |||| ||| |||| ||| | || Sbjct 1313 TCAAGTCACCGTAATGCAAAAATAACTTTTGATTGCGGACATGAGGATCTTGATATAAGT 1372 Query 48392 GATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACC 48451 |||||||||| | |||||| | | | ||||| || || |||||||||||||||||| | Sbjct 1373 GATCAATTCTTTCTGTATTGAATGACGAAGCTCGTCGTTTAATACCATGAACCTCATAAC 1432 Query 48452 CCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTA 48511 | ||||| | |||| || || | || || |||||||| || || ||||| || |||| Sbjct 1433 CTTTTTCTAATAGAAACTCGGCAAGATAAGACCCATCTTGGCCGGTGATACCTGTAATTA 1492 Query 48512 AAGCAACTTTCAT 48524 | || |||||| Sbjct 1493 AGGCCTTTTTCAT 1505 >seq59179 Length=18447 Score = 215 bits (238), Expect = 7e-51 Identities = 636/973 (65%), Gaps = 37/973 (4%) Strand=Plus/Plus Query 47572 GTTTTAGGTTCCCAACCCAATTTTTTCTTTG-CCTTAGAGGCATCACCTAATAAGGTCTC 47630 |||| ||| |||||| || |||||||||| |||||| || || || || | || || Sbjct 16203 GTTTGCGGTGTCCAACC-AAGTTTTTCTTTGGCCTTAGTAGCGTCCCCCAAGAGAGTTTC 16261 Query 47631 TACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACCGTTTTACCAT-CAGAA- 47688 || || || || | |||||| || ||| | ||| | ||| |||| | || Sbjct 16262 AACCTCTGCTGGCCTGAAATACCGAGGGTCCACATTGACGATGATTTGTCCATTCTCAAG 16321 Query 47689 TCAATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGT 47748 || |||| ||||| | || ||||||||| |||| ||||| || || | Sbjct 16322 TC--TACCCACTTCGTTCTCGCCGTGACCTTCCCAAGTAATTTTCATGTCCAATTCTTTA 16379 Query 47749 GCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCA 47808 || | | | | |||||| | ||| || ||||| || ||||| |||||||||||||| Sbjct 16380 GCCGCTGCATTAACAAAATCACGAACGGAATACTGCACACCTGTAGCAATAACAAAATCT 16439 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 ||||| | || |||||||||||||||||| ||| || ||||| | || || ||| Sbjct 16440 TCAGGGACATCCTGTTGAAGCATTAACCACTGCATCTCTACGTAATCGCGTGCGTGCCCC 16499 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG-TCTTGCTTACCTTCAGAGAT 47927 || || || || | ||| || ||| | ||||| | ||| |||| ||| Sbjct 16500 CAATCTCGTTTGGCCGATAAATTCCCGAGA-CTTAACAGTTTTTGTGTACCAAGCTTGAT 16558 Query 47928 TGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTC 47987 | | |||||||| || || | ||| ||||| || || || || || ||||| Sbjct 16559 CCGTGCGAGCGCTCTTGTGATTTTTCTAGTCACAAATGTCTCGCCGCGCAGAGGCGATTC 16618 Query 47988 ATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTT 48045 ||| || || || |||||| |||| || |||| || || | ||| || || || || | Sbjct 16619 ATGGTTGAACAGGATACCATTACACGCGTACAACCCATAGGCTTCGCGGTAATTAACTGT 16678 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 | |||||||| |||| | ||||||||| |||| ||| || ||||| || ||||| Sbjct 16679 A--ATCCAGTAGGCATACATTTTTGCAACCGCATAGGGACTGCGCGGATAAAATGGTGTT 16736 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 || || | || ||||| ||||||||| ||||| | |||| ||| || ||||||||| Sbjct 16737 GTTTCCTTTTGAGGAGTTTCTTGCACCAACCCATACAATTCAGAGGTTGAGGCTTGATAG 16796 Query 48166 A--TACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGC 48223 | | || | || | | | || | |||| || || |||| | || |||| Sbjct 16797 AATTTTGA--TGTTTCCCCAAGTCCTAGAATTCGGATAGCTTCGAGCAAACGCAACGTGC 16854 Query 48224 CTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCT 48283 | | || || | | | | ||||| || ||| || || |||||| |||||||| | Sbjct 16855 CAAGAGCGTCAGAGTTAGCCGTATATTCAGGCTCTTCGAATGAAACCGCCACATGACTTT 16914 Query 48284 GTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTG 48343 |||| | | |||||||| |||||| || | || || |||| || ||| ||| Sbjct 16915 GTGCAGCCAAATTATAAACCTCATCGGGGCGCACTTGTTGAAGAATATGTGTTAAGCTTG 16974 Query 48344 TAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATA----------------- 48386 ||||| || | ||||||| ||||| ||| || || || | Sbjct 16975 ATGAGTCAGTCATATCTCCATGATGCAGTTTGAACTGGCCAGACGCCCCAGGTTCCCCTT 17034 Query 48387 ----AATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAA 48442 | ||||||||||| | ||||| | || || | ||| || ||| || || | Sbjct 17035 CCATCAAGTGATCAATTCGAGCCGTATTGAACAACGATGTCCGGCGTTTAATGCCGTGCA 17094 Query 48443 CCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATAC 48502 | ||||| || || ||||| | || || | | || | ||| |||||||| || | || Sbjct 17095 CTTCATAGCCTTTATCAAGCAAAAACTCGGAAAGATAAGCACCGTCTTGTCCGGTTACAC 17154 Query 48503 CAGTGATTAAAGC 48515 |||| |||| ||| Sbjct 17155 CAGTAATTAGAGC 17167 >seq64606 Length=2588 Score = 158 bits (174), Expect = 2e-33 Identities = 475/729 (65%), Gaps = 16/729 (2%) Strand=Plus/Minus Query 47804 AATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCAT 47863 |||| || || ||||||||| | ||| ||||| || | | |||||||||| | || | Sbjct 2273 AATCGTCTGGGGTTTCTTGTTGCAACATCAACCAAATTCCGTAGACATAATCTTTAGCGT 2214 Query 47864 GTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAG 47923 |||||||||| || | ||| |||||||| || || ||| ||||||||| | Sbjct 2213 GTCCCCAGTCGCGCATTGCGTCAAGATTACCAAGCATTAATTTACTTTGCTTACC----G 2158 Query 47924 AGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTT 47979 |||| | || | || |||| || || || || ||||| ||||| || | ||| Sbjct 2157 AGATGAATATTGGCAACGGCCATTGTGATTTTCCGCGTCACAAACGTTTCTCCCCTTCTC 2098 Query 47980 GGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAG 48039 ||| |||| || || | ||| ||| | ||| |||| || || | ||| || Sbjct 2097 GGACTGGCATGGTTGAATAAAATTCCATTGCAGTTGAACATGCCATACGCTTCTTTGTAA 2038 Query 48040 TTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAA 48099 || | ||||| | || || ||||| ||||| ||||| ||| || |||| || Sbjct 2037 TTTCGCATGATCCAAAAGCCGTAAAGTTTCGCAACTCCATACGGACTCCGCGGATGAAAG 1978 Query 48100 GGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCT 48159 |||||| | || | || | ||||| || ||||| |||||||| ||| || ||| Sbjct 1977 GGTGTGTTTTCATTTTGCCGTTCTTCTTGAACTTTACCGAAAAGTTCAGAGGTCGAGGCT 1918 Query 48160 TGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGG 48219 ||| | || || ||| ||||| | | || || || || |||| || | Sbjct 1917 TGAAATATTTTGACTGAATCGGTCATCTTCAATATCCGAACGGCTTCGAGCAGTCGTAAA 1858 Query 48220 GTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGA 48279 ||||| | |||| | || || || || || ||||||||||| || || || Sbjct 1857 ACGCCTACGCCATCCACATTTGTTGTGTATTCAGGAATATCAAACGAAACTTTAACGTGC 1798 Query 48280 CTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCT-GCTGAATAACCCTCACTAA 48338 | || || || || ||||| |||| || || || | |||| || | | | | Sbjct 1797 GACATAGCGCCTAGGTTGTAAATTTCATGGGGCTGTACTTCGCTG-ATGATTTTAATGAG 1739 Query 48339 ATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAA---TTGAT---CATAAATGTG 48392 || ||| || || | ||| || || |||||||| || | ||| ||| | || Sbjct 1738 GTTCACAGAATCAGTCAGGTCGCCGTAGTGCAATTTGAAATTTGGATTCGAATACAAATG 1679 Query 48393 ATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCC 48452 ||| | || | || || | | |||| || | || || |||||||| ||||| || Sbjct 1678 ATCGACCCTTTCGGTGTTGAATGAAGAGGCTCTTCGCTTAACTCCATGAACTTCATATCC 1619 Query 48453 CTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAA 48512 || || || || ||||||||||| || ||||| ||||||||||| | |||||||| | Sbjct 1618 TTTCTCTAGCAGGAGTTCTGCTAAATAAGAACCGTCTTGTCCTGTCACTCCAGTGATAAG 1559 Query 48513 AGCAACTTT 48521 |||| ||| Sbjct 1558 TGCAATTTT 1550 >seq45200 Length=220 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/141 (75%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 48384 ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCC---CGACGGACAATACCATG 48440 |||||| ||||| || | | |||||| |||||| ||| ||||| |||||| || Sbjct 82 ATAAATATGATCGATCCGGTCTGTATT---TAAAGATGCCGCCCGACGCTTAATACCGTG 138 Query 48441 AACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAAT 48500 || ||||| || ||||| || | |||||||||| ||| ||||||||||| || || | Sbjct 139 GACTTCATAACCTTTTTCCAGTAATAGTTCTGCTAGGTAGGAACCATCTTGGCCGGTTAC 198 Query 48501 ACCAGTGATTAAAGCAACTTT 48521 ||| || |||||||| | ||| Sbjct 199 ACCTGTAATTAAAGCTATTTT 219 >seq78207 Length=1114 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||| ||| || Sbjct 802 TGGAGGATAACGGGATCGAACCGTTGACCCCCTGCTTGCAAAGCAGGTGCTCTCCCAGCT 861 Query 53801 GAGCTAATTCCCCA 53814 |||||||| ||||| Sbjct 862 GAGCTAATCCCCCA 875 >seq25765 Length=261 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 47953 CGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAG 48012 || || || || |||||||| || | || || || || || || || || | ||| Sbjct 259 CGGGTCACGAATGTTTCACCGCGCCGCGGGCTCTCGTGGTTGAACAGGATGCCGTTGCAG 200 Query 48013 GCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 |||||||| ||||| | |||||| ||||| |||||||| ||| ||||| || Sbjct 199 GCATACATGCCGTAGGCTTCACGGTAGTTGACGGTGATCCAGTAGGAATACAGTTTGGCC 140 Query 48073 ACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACC 48132 || ||||||| || || || || || || ||||||||| | || || || || ||||| Sbjct 139 ACCGCATAAGGCGAGCGGGGGTAAAACGGCGTGGTCTCTTTTTGCGGGGTTTCCTGCACA 80 Query 48133 TTACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 || || ||||| || || || ||||||| Sbjct 79 AGGCCGTACAGTTCGGAAGTAGAGGCCTGATAGA 46 >seq85905 Length=734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| |||||| ||||||||||||| ||| ||||||||||||| |||||||||||| Sbjct 90 TGGAGCGTAACGGGTTCGAACCGTTGACCCCCTGCTTGCAAAGCAGGTGCTCTACCAACT 31 Query 53801 GAGCTAATTCCCC 53813 ||||||| |||| Sbjct 30 GAGCTAACGCCCC 18 >seq13023 Length=301 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCT-- 47845 ||||| ||||| |||||||| |||| || ||||||||||||||| | ||| | || | Sbjct 170 CCTGTTGCAATGACAAAATCTTCAGCTTGTTCTTGTTGAAGCATCATCCA--TTGCATTT 113 Query 47846 CGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATA 47900 | || |||||| | ||||||||||| || || | |||| | ||| |||||||| Sbjct 112 CAACGTAATCTTTAGCATGTCCCCAATCTCGTAAGGCATTTAAATTGCCTAGATA 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664586399440640