Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq59922 159 4e-34 seq75063 113 5e-20 seq17866 100 3e-16 seq89378 96.9 4e-15 seq10218 95.1 1e-14 >seq59922 Length=6033 Score = 159 bits (176), Expect = 4e-34 Identities = 902/1433 (63%), Gaps = 20/1433 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| | ||||| ||||| || | | || || ||| |||| || || |||| Sbjct 1749 CCCACAACAAATGTTGATGCGTGTTTCTGTTGGAATTCACAAAAAAGATATCGACTCTGC 1808 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | |||||||| || ||||| |||| ||||| |||||||||||||| | || Sbjct 1809 AATTAAGACATACAACTTAATGTCAGAAGGATGGTTCACACACGCAACACCAACGTTGTT 1868 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || |||| || |||| ||| || ||||| ||| |||||| | | | ||||| || Sbjct 1869 TAACTCTGGAACGCCAAAACCACAAATGTCATCTTGTTTCCTTTTAACAATGAAGGAAGA 1928 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || | || || |||| || | | | ||||| || ||||| | | ||||| Sbjct 1929 TAGTATTGAAGGAATTTATGACACATTAAAACAATGTGCTCAGATCTCTCAATCAGCTGG 1988 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || ||||| || || || | | | || | || || || ||||| Sbjct 1989 TGGAATTGGATTGGCTATGCACAACATCCGTGCGACAGGTTCATACATCAAAGGAACAAA 2048 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || | ||||| |||||||| | | |||||||||| || || | || || Sbjct 2049 CGGTGCTTCTAACGGTATCGTTCCAATGTTAAGAGTATTTAACGATACTGCTAGATACGT 2108 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | |||||| || | || || || || |||| | |||||||| || |||||||| Sbjct 2109 AGATCAAGGTGGAGGAAAACGTAAAGGTTCTTTCGCAATGTACTTGGAGCCTTGGCATGC 2168 Query 75628 CGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 ||| | | || ||| | || || | || || || ||| | |||||| | | Sbjct 2169 TGATGTATTTGACTTCTTAGACTTGAAGAAA-AATCACGGTAAAGAAGAGCAAAGAGCAA 2227 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 ||||| | |||| | ||||| ||||||| | |||||| | || || | || || Sbjct 2228 GAGATTTATTTTACGCTTTGTGGGTTCCAGATTTATTCATGCAACGTGTGAAAGAAAATG 2287 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 | | ||| || | | ||||| || || || |||||||| || || | | ||| Sbjct 2288 GAGAGTGGACTTTAATGTGTCCGCACGAATGC-CCAGGTCTTTCAGATGTGCACAGTGCT 2346 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCA 75865 || || ||||| | ||||| ||||| ||| | | || | || | || | | Sbjct 2347 GAATTCGAAGCGTTGTACACGAAGTACGAAAAAGCAGGGAAAGGAAGAAAAACAATCAAA 2406 Query 75866 GCCGCCGATGTTTGG---AAGGCTATTCTCA-AATCACAGACGGAGACTGGAACACCATA 75921 || || ||||| || | ||| | |||| || | ||||| || || || || Sbjct 2407 GCACAAGACCTTTGGTTCAA----AATCTTAGAATCTCAAATTGAGACAGGTACTCCTTA 2462 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||| | ||||| |||||| ||| || |||||| | || || || ||||| || Sbjct 2463 CATGTTGTACAAAGATGCTGCAAACTCAAAATCAAACCAACAAAACTTAGGTACAATTAA 2522 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 | ||||| | || || || ||| |||||||||| | |||||| || ||||| Sbjct 2523 GTCTTCAAACTTATGTACTGAGATTATAGAGTACACTGCGCCAGATGAGGTTGCAGTTTG 2582 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 || ||||| || | || | || || ||||| | ||| || | | || ||| | Sbjct 2583 TAACTTGGCTTCTTTAGCATTGCCTAAATATGTTACTGATGAAG---GGAAATTCGATCA 2639 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 || ||| | || | || | | || || | || | ||||||| | Sbjct 2640 CGACAAATTGTTCGAGGTAACGTACCAAGCGACATTGAACTTGAATAAAATCATTGATGG 2699 Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 || || || || ||||| || ||| ||||| ||||| ||| | || ||||| || Sbjct 2700 TAACTTCTACCCAGTTGAAGAAGCTAAAAACTCTAACATGCGTCACCGTCCAATTGGATT 2759 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGA 76281 ||||||||||| | || |||| || || || | | ||||||| ||||| || Sbjct 2760 AGGTGTTCAAGGGTTAGCAGATGCTTTCATCTTAATGGGATTGCCATTTGAATCAGAAGA 2819 Query 76282 AGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAG 76341 ||| | | |||| | |||||||| |||||| |||| || || || Sbjct 2820 AGCAAGAGCATTGAACAGAGAAGTTTTTGAAACAATGTATTACGCTTCAATGACTGCATC 2879 Query 76342 TTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCA 76401 | || || ||| ||| | || | || | | | ||| || || || | || | Sbjct 2880 TAAAGATTTAGCTAAAGTTGATGGACCATACCAATCTTATGAAGGATCGCCAGTTTCAAA 2939 Query 76402 AGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-CAACTACGACTGGGATG 76460 ||| | || || ||||||||| || || | |||| || | || ||||| | Sbjct 2940 AGGTCAATTCCAATTCGATATGTGG-AATGTTACTCCAACAAGCAGATGGGAATGGGACG 2998 Query 76461 TTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGC 76520 | | || | | | | |||| | ||| | |||||| | || |||||||||||| Sbjct 2999 TATTGAAAGCAGAAGTGATGGAGCACGGTGTGCGTAACTCATTGTTATTGGCACCAATGC 3058 Query 76521 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAA 76580 ||||||| || || || |||||| | || || || ||||| || |||||||| || ||| Sbjct 3059 CAACAGCTTCAACAGCTCAAATCCTTGGAAACAACGAATGTTTCGAACCATATACTTCAA 3118 Query 76581 ACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 ||||||| ||| | | |||||||||| |||| || ||||||||| Sbjct 3119 ACATCTATACAAGACGTGTGTTGTCAGGTGAGTTCATCATCGTTAACAAGCAC 3171 >seq75063 Length=1318 Score = 113 bits (124), Expect = 5e-20 Identities = 141/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 65018 TTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCG 65077 || |||||||||| | ||||| | |||||| || | | || | ||| || || | Sbjct 615 TTAAGAAGAAGGCTGACTGGGCTTTTAAATGGATTAATAAGAA---TGACTCATTTGCTG 559 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 | | | |||||||||| ||||| || || || |||||||| ||||| || ||||| | Sbjct 558 AAAGATTGATTGCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCTTTTTGCGCAA 499 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 ||| |||||||| ||| | ||| ||||||||||| || ||||| ||||| | || | Sbjct 498 TTTTCTGGTTGAAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAATGAGTTGATCT 439 Query 65198 CCCGAGATGAGGG 65210 | |||||||||| Sbjct 438 CAAGAGATGAGGG 426 >seq17866 Length=285 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 ||||| | |||||||| || |||||||||||||| |||||||| || | ||||| Sbjct 224 TCACAAATAGAGACTGGTACGCCATATATGCTTTATAAGGATGCCGCCAATAGAAAGAGC 165 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 |||||| ||||||| || || || || || ||||| |||||||| || || || Sbjct 164 AACCAACAGAATTTAGGTACTATTCGCTCGTCCAACCTTTGTACGGAAATATTGGAATAT 105 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 || ||||||| ||| || || |||||||| || || || ||||||| || Sbjct 104 ACTTCCCCGGATGAGGTGGCAGTATGTAATTTGGCTTCCATTGCACTTCCAATGT 50 >seq89378 Length=630 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/442 (66%), Gaps = 18/442 (4%) Strand=Plus/Plus Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||||| || |||||||| ||||||||||| ||||||| || | ||||| | Sbjct 10 ACTTTGTAGAAATGTTTGTGGGTGTGGGTGCTTCCCGGGTTCGGGACATGTTTGAGCAAG 69 Query 175454 CCCGCGAAAATCAA---CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC 175510 || |||| || || || ||| | || || |||||||| || || || || | Sbjct 70 CCA---AAAAGCAGGCGCCCTGCATTATATTTATCGATGAGATCGACGCCGTAGGTCGTC 126 Query 175511 AACGCAGCGCTGGTGGT-ATGCCAGCA--AATGACGAGAGAGAACAAACAATTAATCAAC 175567 | || | |||||| ||| | | ||||| ||| | || ||||| | ||||||| Sbjct 127 ACCGTGG---TGGTGGCCATGGCGGTGGTAATGATGAGCGTGAGCAAACCCTCAATCAAC 183 Query 175568 TACTCACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCA 175624 | || || |||||||| ||||| |||||| |||||| | || ||||| || | Sbjct 184 TGCTGGTAGAAATGGATGGTTTTGAAGGCAATGAA---GGCATTATTGTCATTGCTGCGA 240 Query 175625 CTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGA 175684 |||| ||| ||| | | ||| | || | | ||||| || |||||||||||| || Sbjct 241 CTAACCGCCCCGATGTGTTAGATAAAGCATTGTTGCGCCCTGGACGTTTTGATCGCCAGG 300 Query 175685 TCCAAGTGGGTCTTCCAAGTGTGCGAGGTCGCAAGAAGATTTTGGGAGTCCATGCCCGAG 175744 || | || || || || | | || ||||| | | ||||| ||| |||| || Sbjct 301 TCTATGTCGGGCTGCCGGATATTCGTGGTCGTGAACAAATTTTAAAAGTACATGTGCGTA 360 Query 175745 ACAAGAAGTTATCTGAAGATGTCAGTCTCGCGAGTATTGCCAAGCAAACAACTGGATTCT 175804 | | || ||| | || ||| | | | ||||| | |||| |||| || | Sbjct 361 AGGTGCCTCTAGATGACGGCGTTGATCTTGGCATTGTTGCCCGGGGAACACCTGGGTTTT 420 Query 175805 CTGGTGCGGAGTTGGCAAACCT 175826 ||||||| || ||||| ||||| Sbjct 421 CTGGTGCTGATTTGGCTAACCT 442 >seq10218 Length=314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || || || | | || || || || || |||||| | || || |||||| Sbjct 232 CCAGGTACAGGTAAAACATTATTGGCGCGCGCAATTGCTGGTGAAGCCAAGGTTCCATTC 173 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | | | | |||| || | ||||| ||||||||||||||||| ||||| | | Sbjct 172 TTTACTATT--TCTGGTTCAGATTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTCGTG 115 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || || | ||||||| || ||||| |||||| ||| |||| |||||||||| Sbjct 114 TACGTGACATGTTTGAAACTGCGAAGAAAAATTCACCATGCATTATCTTTATTGATGAGA 55 Query 175493 TTGATGCGGTGGG 175505 |||||||||| || Sbjct 54 TTGATGCGGTTGG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595755640437760