Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq20842 165 3e-36 seq84156 161 4e-35 seq37945 116 1e-21 seq105670 107 7e-19 seq1104 105 2e-18 >seq20842 Length=276 Score = 165 bits (182), Expect = 3e-36 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44401 GGCTATCGCATCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCG 44460 ||| ||||||||||||||||| || | || | || ||||| ||||| |||| || Sbjct 24 GGCGATCGCATCGGCATAGACCCGAATTTCATATTGCGCATGGCTGTCGGCACGCAAACG 83 Query 44461 CAGGAAGTGGAAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGAC 44520 |||||||||||| |||||||| | ||| | ||||||||||||||| ||||| | |||| Sbjct 84 CAGGAAGTGGAACAGGTTGTGCAAGTCCACCTTCCAATACCATTGTGTGTAAATATTGCT 143 Query 44521 CGGCAAGTTCATGCGGGCCAGTTCGCGGGCCAAGCCGTCCTGACCGTCATCGCTGATCAT 44580 ||||| |||||| || |||||||| || |||||||| | | || ||||| |||||| Sbjct 144 CGGCAGGTTCATCCGCGCCAGTTCCCGCGCCAAGCCCTGTTTGCCATCATCCGAGATCAT 203 Query 44581 CTCTTCATAGTGATCATAGGCGTTCTGGGCGTCG 44614 | ||||||| ||||||||| | ||||||| Sbjct 204 GTGCTCATAGTTGTCATAGGCGCGGTTGGCGTCG 237 >seq84156 Length=807 Score = 161 bits (178), Expect = 4e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 51998 CCAGAAGCATCCGCAGCAACACCTTTGACGATTGCACCCTTGGGGCGGATGGTGCTGAAG 52057 || || |||||||| |||| || |||| ||| ||| ||||||| | ||| |||| Sbjct 805 CCGGAGGCATCCGCGCCAACGCCCCTGACCGGTGCTCCCCTGGGGCGAAGCGTGGAGAAG 746 Query 52058 TCATAGCCGATGCCGCCGCCCTGTTGCATGGTCAGCGCAGCTTCCTTCAGCATGTCGAAG 52117 |||| |||||| || ||||| || ||||||||||| || || || ||| |||||| Sbjct 745 TCATGGCCGATACCACCGCCTTGCTGCATGGTCAGTGCGGCCTCGCGCAGTCCATCGAAG 686 Query 52118 ATGCCGCCCATGTCGTCTGGCACGGTCCCCATGACAAAGCAGTTGAAGAGGGTGACATTT 52177 || |||||||||||||| | | || |||||||||||||||||||| || || || || Sbjct 685 ATCGCGCCCATGTCGTCTTGAATGGCTCCCATGACAAAGCAGTTGAACAGCGTAACCTTG 626 Query 52178 CGTCCAGTCCCGGCCCCGGCGGTGATCCGGCCAGCGGGCAGATACTT 52224 || | || || || ||||| ||||||||||||| ||||| |||| Sbjct 625 CGCTCGGTGCCCGCGCCGGCAATGATCCGGCCAGCCGGCAGGAACTT 579 >seq37945 Length=233 Score = 116 bits (128), Expect = 1e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 51661 ATTGATCCGGTCGATGAACAGGACACCCGGCTCAGCAACATCATAGGTGTGCTTCATCAT 51720 |||||||||||| ||||| | ||||||||||| || | |||||| || |||||| || Sbjct 8 ATTGATCCGGTCAATGAAAATCACACCCGGCTCTGCGAAATCATACGTCGCCTTCATGAT 67 Query 51721 GGCGTCCCACA-ATTCAGTGGCGCGGACTCGGCTATACACCTTACCCTCAAACACCAGAT 51779 |||| ||||| || ||| | | |||| | || ||||| || || ||| || | Sbjct 68 CGCGTTCCACAGATCCAGCG-CTTGGACGGTTTTGTAAACCTTGCCATCGAACTTCAATT 126 Query 51780 CCCACATCTCATCGGCCTCTTTGGCCTTCATGAAAGCGTCGGTGATCAAGACGGACATGT 51839 |||| | | ||||| | || | |||||| | |||||||| | |||||||||| Sbjct 127 CCCAAGGTCCGTTGGCCTTTACTGCATCCATGAAGGGATCGGTGATGAGAACGGACATGT 186 Query 51840 TGAACATCCGCAGCCGGTTCGGATCCGACTTGGCCGTGATGAA 51882 |||||||||||| || | ||||||||||||||||| || Sbjct 187 TGAACATCCGCAAACGCGCTGCGTCCGACTTGGCCGTGATAAA 229 >seq105670 Length=392 Score = 107 bits (118), Expect = 7e-19 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 51034 CAGAACCTTGCGGGTGTAGCTGTTCGCAAAGACTGGTTCGATGCCGGATGACACGTTCCC 51093 ||| |||||||| ||||| | || || || || || | || ||||||||||| || Sbjct 280 CAGCACCTTGCGATTGTAGTTCAGCGAGAATACCGGCTCTACCCCTGATGACACGTTGCC 221 Query 51094 GGCGTAGAGGCTGATGGTGCCGGTCGGCGCGATAGAGGTCAGCAGGGCGTTCCGAATACC 51153 ||| | || ||||||||||| ||||| || |||||||| || || || || | ||| Sbjct 220 GGCAAACAGCGAAATGGTGCCGGTGGGCGCAATCGAGGTCAGAAGAGCATTGCGTACACC 161 Query 51154 ATGTTCACGGATGGCGTCACGCACATCTTGATCCA---TGCTCATCATGTTCTCACCGGC 51210 ||| | | |||||| | |||||||| | ||||| || || |||| | || | Sbjct 160 ATGCTTCCTGATGGCTGCGCGCACATCATCATCCAGTTCGCGCA-CATGGCCGGAC--TC 104 Query 51211 CAGATACTTGTCAGCATCAAACAGCGGGAACGCACCCTTCTCTTTGGCGAGATC 51264 ||| ||| || || || ||||||||||||| ||||||||| ||| || || Sbjct 103 CAGGTACGCCTCGGCGTCGAACAGCGGGAACGGCCCCTTCTCTGCGGCAAGCTC 50 >seq1104 Length=359 Score = 105 bits (116), Expect = 2e-18 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 51443 TTGGACGTGTCCACCACATTGTCCATCATGCGGATGGCGGTGCGGACCAGCT-TG---TC 51498 || ||| ||| || || ||||||| ||| || | ||| ||| ||| | || || Sbjct 352 TTTGACACGTCGACGACGTTGTCCAGCATCCGCACGGCTATGC----CAGTTATGCGTTC 297 Query 51499 CAGCGCCTTCAGGTCGATGGTAGCGGCTTCGGTGAAGGCATACTTGACCATGCGGGCCAT 51558 ||| | |||||||||| | || || |||| || | ||| |||| || ||| | Sbjct 296 GAGCTCTTTCAGGTCGAGGTGTGCTGCATCGGCAAACGGGGCCTTTACCAGGCTGGCAAG 237 Query 51559 GTTGATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGGGTTGTTCGCCGCAGGGGTT 51618 ||||| ||||| || || |||||||||||||| ||||| || ||||| ||||| || || Sbjct 236 ATTGATGGAACCGAGCAGGCAGGCACCGTAGGGCGGCAGCGGCTGTTCACCGCACGGATT 177 Query 51619 TGTGGCCGCGATGACCTCGCAATAGTTCAGGTTGTTCCGGTTATTGATCCGGTCGATGAA 51678 ||||| ||| ||||| || ||||||||| || |||||| ||||| || || Sbjct 176 GGTGGCGTGAATGGTTTCGCAGTAAGACAGGTTGTTGCGCGCATTGATGCGGTCAATAAA 117 Query 51679 CAGGACACCCGGCTCAGCA 51697 | || || || || ||| Sbjct 116 AATTACGCCGGGTTCGGCA 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181907908590080