Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq76311 192 2e-44 seq90424 154 4e-33 seq87463 116 1e-21 seq69077 96.9 9e-16 seq80413 84.2 6e-12 >seq76311 Length=1237 Score = 192 bits (212), Expect = 2e-44 Identities = 366/533 (69%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 8376 GAGGTCGATGGCAAGCCCTACATGCACGATGCCAAGGGCGGGCTGAAACCTGTCGACCTC 8435 || ||| |||||| ||| | ||| ||||||||||||| || || ||||| ||| Sbjct 819 GACGTCAATGGCAGGCCGCATATGGCCGATGCCAAGGGCCACCTCGTGCCCGTCGATCTC 760 Query 8436 ATCAAGCCGGCCGACAAGCTGATCGACGAGCAGGTGCGCAAGATCTTCGGATTTGCGCTG 8495 ||||||||| |||||||||| || ||||| |||||||| || | | ||||| ||| Sbjct 759 ATCAAGCCGACCGACAAGCTCGAAGATGAGCAAGTGCGCAAAATTATGGCTTTTGCACTG 700 Query 8496 GCGCT--CAGTGACCAGGTCGCGCGGTTCAAGGGGCATACCTTCGACGATCTCGGAGATC 8553 || || ||| | || | || || ||| ||||| | | ||| | | | Sbjct 699 GCACTGTCAGCGGACAT-TAGC-CGCTTCCGTATCAATACCATGGCTGATTTAGATGGCG 642 Query 8554 TCGATGCGATGCTCGCCCAGGAATATGGTCTCAAGATCGGCGGCGCGAAGGGCAACAAGA 8613 |||||| ||||| | |||||||||||| | | || || ||| |||||| | Sbjct 641 TCGATGGTATGCTTGAACAGGAATATGGTGTTGGCAAAGGTGGTAAGAAAGGCAACCGCA 582 Query 8614 CCTACTTGACCCATGACGGCCTCTTCAAGATCGAGGTTCGCGTCTCCGATC-TGCTGACC 8672 | || | | |||||| || | || | ||| | || |||| | | ||| Sbjct 581 CTTATCAGTCATTTGACGGGCTAATGAAAGTGTCGGTGCAAGTTGCCGAGCGTATTGAT- 523 Query 8673 TTCGGCCCCGAGCTGCAGGTTGCGAAGGGACTGATCGACGAGTGTCTGAACGAATGGGCG 8732 ||||| || |||| || |||| || | ||||| |||||||| |||||||||||| Sbjct 522 TTCGGGCCGCAGCTCCAAATTGCCAAAGAGCTGATTGACGAGTGCCTGAACGAATGGAGC 463 Query 8733 GCCGACAGCCGTCCCGAGATCCGTGCGATCGTCACGCGCGCCTTCAACACCGACAAGGAA 8792 | |||||| ||| | ||||| | |||||||||||||||||||| ||||| ||||| Sbjct 462 GAGGACAGCGATCCGAAAATCCGAACCATCGTCACGCGCGCCTTCAATACCGATCAGGAA 403 Query 8793 GGCCAGATCAACCGCTCCGAAGTCTTCATGCTGCTGCGCCTCGAGATCGAGGACCCGCGC 8852 ||| |||||||| || ||| ||||||||||| |||| ||| ||||| || || ||| Sbjct 402 GGCAAGATCAACAAATCTGAAATCTTCATGCTGATGCGGCTCTCAATCGAAGATCCACGC 343 Query 8853 TGGCAGGAGGCGATGCGCGCGATCCGCGATGCGATCCGGGTGATCGGGTCGAA 8905 |||| | || ||| || |||||||| || || || || | ||| || || Sbjct 342 TGGCTCAAAGCCATGGATGCAATCCGCGACGCAATGCGTGTAACCGGCTCCAA 290 >seq90424 Length=605 Score = 154 bits (170), Expect = 4e-33 Identities = 140/175 (80%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 39913 GAGTTTTCCGCTAAGTT-TCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATCGAA 39971 ||||||||||| | ||| ||||||| ||||||||||| |||||||| |||| | Sbjct 389 GAGTTTTCCGCACTATACTCCTTGGCTGGAGGAGGAGCGGAAATGCATGAAGACATCTAG 448 Query 39972 GTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTCGC 40031 ||||| ||||||||||||||||| | ||||||||||| ||||| || | || || Sbjct 449 ATTCACGCCCGCGCAGAAGGCGTTCATTATCAAGCAGGGCGAAGAAGGTCCGACTGTTGC 508 Query 40032 AAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGGAAGAAG 40086 |||||||||||||||| ||||||||| |||| | |||||||||||||||||| Sbjct 509 TGAGATCTGCCGCAAGGCTGGGATCAGCGCGGCGACGTACTTCAACTGGAAGAAG 563 >seq87463 Length=684 Score = 116 bits (128), Expect = 1e-21 Identities = 211/303 (70%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 25395 CGACCGAGTGCTATGACGGTCAGAACTTCTTCGACACCGATCACCCCGTGCTCGACGAGG 25454 |||| | || | ||| || ||| ||||||| ||||||||||| || | || ||| Sbjct 444 CGACAAAATGTTTTGATGGCCAGTACTTCTTTGACACCGATCATGTGGTCTTGGATGAGA 385 Query 25455 ACGGGAAGACTGTCACCGTCTCGAATACCGGTGGCGGCACGGGGACGCCCTGGTTCCTGC 25514 |||| | | | || || ||| | || ||||| | || ||||| |||||||| | Sbjct 384 ACGGTGATCCGCAATCAGTATCCAATGCAGGCGGCGGTTCCGGTACGCCTTGGTTCCTTC 325 Query 25515 TCGACACCACGCGGGCGCTCAAGCCGATCATCCTGCAGAAGCGCCGGGACTTC--CAGT- 25571 | || |||| || |||||||||||||| ||| ||||| |||| || | Sbjct 324 TGGATGTATCGCGCGCACTCAAGCCGATCATTTATCAGGAGCGCAAATCCTTCGGCAATC 265 Query 25572 TCGT-CTCGAAGACCAAGCTCG-ATGATGACCACGTCTTCATGAACAAGGAATTCCTCTA 25629 | || | | ||||| ||| || ||||||| ||||||||||||| ||| | | ||||| Sbjct 264 TGGTGCGCAAAGAC--AGCCCGGATGATGAGAACGTCTTCATGAAGAAGAAGTATCTCTA 207 Query 25630 TGGCACGGATGCCCGCGCCAATGTCGGCTTCGGGTTCTGGCAAATGGCCTACGGCTCCAA 25689 || |||| ||| |||||||||||||| || |||||||| |||| | ||| || || Sbjct 206 CGGTCTTGATGGCCGTGCCAATGTCGGCTTTGGCTTCTGGCAGTTGGCGTTCGGTTCAAA 147 Query 25690 GCA 25692 || Sbjct 146 ACA 144 >seq69077 Length=1869 Score = 96.9 bits (106), Expect = 9e-16 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 39913 GAGTTTTCCGCTAAG-TTTCCCTGGCTGGGAGA-GGAGCGGAATCGCATGAAGGCATCGA 39970 |||||||||| | ||||| ||| ||||| | ||||||||| ||||||||||||| Sbjct 195 GAGTTTTCCGGGTCGATTTCCTTGGTTGGGAAAAGGAGCGGAAAGCGATGAAGGCATCGA 254 Query 39971 AGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGG 40015 ||||||| || ||||||||||||||||| | ||||| ||||||| Sbjct 255 AGTTCACGGACGCGCAGAAGGCGTTCATTATCAAGCAAGGCGAGG 299 >seq80413 Length=984 Score = 84.2 bits (92), Expect = 6e-12 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 39913 GAGTTTTCCGCTAAG-TTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATCGAA 39971 |||||||||| | ||||||||| ||||| |||||||||| |||||||||||||| Sbjct 520 GAGTTTTCCGGGTCGATTTCCCTGGTTGGGAAAGGAGCGGAAAGTGATGAAGGCATCGAA 579 Query 39972 GTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTC 40029 |||| | || ||| ||||| ||||| | | ||| ||||| || || | |||| || Sbjct 580 GTTCCCGGACGCGAGAAAGGCATTCATTATCAGGCACGGCGAAGACGGAATGCCGATC 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128450888439232