Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021070.1 Length=33277 Score E Sequences producing significant alignments: (Bits) Value seq55464 87.8 4e-13 >seq55464 Length=205 Score = 87.8 bits (96), Expect = 4e-13 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 33110 GTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCATCT 33169 || ||||| |||||||||| | || || ||||| | || ||||| | ||||| ||| Sbjct 184 GTGCCTTTCTCTGCCCAAAGCCGTGTCGTCGTATTCTGCTGCCCAAACCGTGCTTCGTCT 125 Query 33170 TGAAACCAAACAAGCACTTCTTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGTTTCT 33229 || ||||| || || | ||| | | |||| || |||||| | ||||| || Sbjct 124 TGGAACCATACGTCTACATTTTTAAGGCTTATATTCCACGGGATCGTGCGGATCATTGTG 65 Query 33230 ATTGGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277 ||| ||||||| ||||||| |||||| ||| ||||||||||| || Sbjct 64 ATTTCGAATTTTCTTAAAAGTTTCTTGTACTTCATCTGATTGTTTAGG 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106226932073536