Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq42898 102 6e-17 >seq42898 Length=225 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 11480 GTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCT 11539 ||||||| | ||||| | || || || ||||| || |||||||| ||||| || ||| Sbjct 149 GTTAATGCGCTTGAAGCCATCCGATTTTATGTTAGCTTTGCTTGTTCTTTTGCTTTTGCT 90 Query 11540 GAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCA 11599 |||||||| | | ||||| ||||| || || || ||| | || || |||||||||||| Sbjct 89 GAACGCGAATTGCTTGAAGGCAATGCGAAGATAATTAAGTTAATAGCGCGTGATGAAGCA 30 Query 11600 CTACACCAAAGCGGTACACAGCACAT 11625 ||||| || |||||| || || || Sbjct 29 TTACACTTAACCGGTACTCAACATAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342516546713888