Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq97248 158 2e-33 seq19544 143 5e-29 seq87644 141 2e-28 seq108602 127 4e-24 seq94139 122 2e-22 seq88500 91.5 3e-13 seq80117 91.5 3e-13 >seq97248 Length=461 Score = 158 bits (174), Expect = 2e-33 Identities = 194/261 (74%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||| |||| ||| | || | |||||| ||| || || || Sbjct 412 ATTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 353 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| ||| |||||||| ||||| || || || |||||||||||||| || Sbjct 352 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGT 293 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || || || | || ||||||||| || |||| Sbjct 292 GGGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCA 233 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTATTAGT 193369 || |||| || || || ||||| |||| || ||||| || |||||||| ||| ||| | Sbjct 232 ACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTA-T 174 Query 193370 AAAATAATTATTTTAAATAAT 193390 ||||| ||| | |||||| || Sbjct 173 AAAAT-ATTTTATTAAATTAT 154 >seq19544 Length=280 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | || |||||||| ||| | || | ||| || ||||| Sbjct 41 ATTTGCATTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTG 100 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || ||||| ||||| ||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 101 TAATCAGATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGA 160 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || || || |||| ||| |||||||||||| Sbjct 161 TCTGGTGGGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGAT 220 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || | || |||||||| || ||||| || Sbjct 221 TGTTCGACGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATT 279 >seq87644 Length=678 Score = 141 bits (156), Expect = 2e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| |||| || || ||||| | |||| ||||| |||||| ||||| ||| Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGT 193279 ||||||||||||||||| ||||| || Sbjct 256 ATTCCTTCTTTATCTTGAATTTTAGT 231 >seq108602 Length=371 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| | || || |||| ||| | |||| ||||| ||| ||||| || ||| Sbjct 121 CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGAT 180 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | |||||| || |||||||||||||| ||||| || | ||||||||| || || || Sbjct 181 AGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGA 240 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||||||||| || || || || | ||| || || || || ||||| Sbjct 241 ATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACA 300 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| || || ||||| || || || || || ||||| || |||||| Sbjct 301 TCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq94139 Length=510 Score = 122 bits (134), Expect = 2e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCA-GATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| | ||| ||||| | || || |||| || | | |||| |||||| |||||| Sbjct 108 TTTAGAAACCTCCTCTAATTCTGAGAACCAAGAAG-ATGGTAGACTCTTTTCTAATATTG 166 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||||| ||| || ||||| ||||| |||||| |||||| || | Sbjct 167 TAATCTGCAGCTGTTCTTCCATCTTCCAATTGCTTTCCACCAAAAACTAATCTTTGGCTA 226 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||| || || ||||| || || || ||||||| ||| || || ||||| ||| Sbjct 227 TCAGCTGGGATACCTTCCTTTTCCTGAATTTTGGCTTTGATGTTATCAATAGATTCGTTG 286 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || | || ||||||||||||||||| ||||||||||||| ||||||||| Sbjct 287 TGTTCAACATCGACTGTGATAGTTTTACCTGTTAGAGTTTTTACAAATACTTGCATTTT 345 >seq88500 Length=653 Score = 91.5 bits (100), Expect = 3e-13 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 || || ||||| ||| | | || ||| | || ||| | || || | | ||| || Sbjct 352 ATCTACATACCGCCTTTAAGTCTAAGGATCAAATGAGGAGGAGACTTTCTCTGAATGTTG 411 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| | | ||||| | ||||| ||||| || ||||| |||||| Sbjct 412 TAGTCAGAGAGAGTTCTTTCACCTTCTAACTATTTTCTCGCAAAGATCAATCTTTGTTGA 471 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 | || || ||| |||| || || || || || || | || ||| |||| |||| || Sbjct 472 TTTGGTGGAATTTCTTCCTTGTCCTGAATCTTAGTCTCTACATTATCAATACTATCTGAT 531 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT-TAGCGTTTTTACAAATATTTGCATT-T 193362 || | |||| | | ||||||||||| || || ||| | ||| ||||||||| | Sbjct 532 TGCTTGATATCTATAATAATAGTTTTACCAGTCTAAGTTTTAAAAAAAGATTTGCATTAT 591 Query 193363 TATTAGTAAAATAATTATTTTAAATAAT 193390 | ||| |||||| ||| | |||||| || Sbjct 592 TGTTA-TAAAAT-ATTCTATTAAATTAT 617 >seq80117 Length=1002 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATATTATAGTCG 193190 ||| ||||| |||| | ||| | ||||| ||| || | ||| |||| || || Sbjct 293 ACCTCCTCTTAATCTTAATACTAAATGCA--GTACACTACCGCTAGTAATAAAGTATTCA 350 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||||| || ||| |||||||||||||| |||| || | ||| |||||||| || Sbjct 351 CTTAACGTAATACTATCTTCTAATTGTTTTCCTCCAAATATAAGTCTTTGTTGATCTGGT 410 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 || |||||||| ||||||| || || |||||| || ||||||||||| Sbjct 411 GGAATTCCTTCCATATCTTGAATATTTATTTTTAAATCCGAAATAGTATCG 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898426911536640