Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq59922 306 5e-78 seq97248 150 3e-31 seq19544 149 9e-31 seq108602 118 2e-21 seq75063 118 2e-21 seq87644 116 5e-21 seq14831 89.7 8e-13 seq88500 86.0 9e-12 >seq59922 Length=6033 Score = 306 bits (338), Expect = 5e-78 Identities = 614/902 (68%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 17842 ATCATTTTTATCAAAATT--AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTT 17899 |||||| || ||||| | |||||||| |||||| || ||| | || || ||||| || Sbjct 1169 ATCATTGTT--CAAAACTCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTC 1112 Query 17900 GTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATA- 17958 || || |||| | ||| || | | ||| ||||||||||| || || | || |||| Sbjct 1111 GTTTTCCCTTGAATTGAAATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTG-AATAC 1053 Query 17959 TTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACAT 18018 |||||| | | |||||| | ||||||||||| || ||||| || | ||||| ||||| Sbjct 1052 TTTTTCGTTTCCTAATTCCAACAATAATCTATCAGCAACAAACTCAATGTATTGCGACAT 993 Query 18019 CAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTC 18078 |||||| | ||||| || | || | | || || || |||| ||||||||||||||| Sbjct 992 CAAATCACTGTTCATTCCGATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTC 933 Query 18079 TATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTAT 18138 || ||||| | || || || || || | ||||| | ||||| || || Sbjct 932 AATTTCAACTGCGTCAAGGATAATTTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGAT 873 Query 18139 GTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA 18198 ||| || ||||||||||| || |||||| ||| || ||||| ||||| || ||||| Sbjct 872 GTGGTTGGTGTATAATAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAA 813 Query 18199 TTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC 18258 |||||| || | | ||| ||||| | |||||||| || | ||| | || || Sbjct 812 CTCGTTAGAGAAAGAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACA 753 Query 18259 GAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 |||| || || ||||| || || || || || || || | | |||||| ||||| Sbjct 752 GAAAGAACCTGAGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAA 693 Query 18319 ACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGG 18378 | | || ||| ||||| ||||| ||| ||| | ||| Sbjct 692 ----TGATCCTTCATCA--ATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTC 639 Query 18379 TATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTC 18438 || | || |||||||||||||||| ||||| || || | ||||| || ||||| || Sbjct 638 CATTGTGTCAATAGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATC 579 Query 18439 GATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 ||||| | |||||| ||||||| || ||| |||| | |||| || || | || || Sbjct 578 TATTAAAAGCGAATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAA 519 Query 18499 CGATCTAGCCTCGGGATATTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTA 18556 || | ||||| | ||| |||| ||| | | ||| || ||| | || || ||||| Sbjct 518 AAATTTTGCCTCAGTATACTGAACTTCTGACAAGAAATTC--TCTGCTAAGTTTTCATTT 461 Query 18557 ACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTA 18616 || || || || | | |||||||| ||||| |||| ||||| ||||| ||||||| Sbjct 460 ACAATTCCATCTGATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTA 401 Query 18617 TCCTTGAGAT---TGTTCCATTCATCTATATC-TTTTGATAGATCAACTTCTTCCGATGT 18672 || || || | | | ||| ||| || || |||| ||||||| ||||| | ||| Sbjct 400 TCGTTCAGCTTCGTATCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGT 342 Query 18673 CCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||| ||| | |||||||| |||||| | |||| || || ||||| || ||||| Sbjct 341 CCAGAAACTAGCTTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAA 282 Query 18733 TA 18734 || Sbjct 281 TA 280 >seq97248 Length=461 Score = 150 bits (166), Expect = 3e-31 Identities = 184/250 (74%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 155801 TAATAAAAATTTATGTAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTA 155859 |||||||| || | ||| ||| |||||||| || | || || || ||||| || || | Sbjct 160 TAATAAAATATTTTATAACAAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAA 219 Query 155860 TTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATA 155919 |||| ||||| || || | || |||| |||| ||||| || | ||| || ||||| | Sbjct 220 TTACCTTAGATGTTGAGCAATCAGATACTATTGACAACGTCAAGACTAAGATTCAAGACA 279 Query 155920 AAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATA 155979 |||||||||| || ||||| ||||| |||||||| | || || ||||| | |||||| Sbjct 280 AAGAAGGCATCCCACCAGATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATG 339 Query 155980 CCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGAT 156039 ||||| ||||| ||||| || || |||||| | || |||||||| || | ||| Sbjct 340 GAAGAACATTATCTGATTACAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGAC 399 Query 156040 TAAGAGGCGG 156049 | ||||| || Sbjct 400 TCAGAGGAGG 409 >seq19544 Length=280 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || || ||||||||||| || ||||| | || |||||| | Sbjct 279 AATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAA 220 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| || || || | ||| || |||||||| ||||| || || ||||| Sbjct 219 TCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGAT 160 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| || ||||| | |||||| ||||| ||||| ||||| Sbjct 159 CAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTAC 100 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||| || ||| | || |||||||| || | ||| | ||||| || Sbjct 99 AATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGG 50 >seq108602 Length=371 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | ||||||||||| || || ||||| || ||| | || Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || || | ||| || ||||||||||| || || || ||||| || Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| | || | ||| || || || | ||||| |||||| ||||||||||||| Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||||| || | ||| | ||||| || Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGG 121 >seq75063 Length=1318 Score = 118 bits (130), Expect = 2e-21 Identities = 554/859 (64%), Gaps = 33/859 (4%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| || || | |||||| | ||||||||||| || ||||||| | ||| || Sbjct 111 GCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAATC 170 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTA-ATTCGTA 17979 | | ||| | || ||||||||| | || | | ||| ||| | | ||| Sbjct 171 ATGTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTG---GTACTCCAAGAGTA 227 Query 17980 TA-ATAA-TCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | | || |||||| || ||||| || | ||||||| ||| | | || ||||||||| Sbjct 228 AAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCA 287 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | ||| | || | || ||| | |||||| ||| || | || | || | Sbjct 288 ATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGTC 347 Query 18098 ATTATGTTTATTACC-CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAA 18156 | || || || | || |||| | ||||||| || || ||||| || || Sbjct 348 AAAAT-TTCATAAATTCTTTCATTTGATACCTTATTAACCATATGTTTATAC---AACAA 403 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||| ||||| ||||| || |||||||| || || || || ||| || | Sbjct 404 ACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAG 463 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACT-AGAAAAGA 18275 || ||||| | | ||| ||||| | ||| || || | || ||| || ||| |||| Sbjct 464 GCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGC-GCAAAAAGACCCAGAGAAGA 522 Query 18276 ATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 | || || || || || || ||||| || |||||||||||||| || | | ||| || | Sbjct 523 AAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAA--TG-AGTCATT-CTTA 578 Query 18336 GT-ATCCATTTTTGTGCCCATTC-TCCTTNNNNNNNNATACACGGT----ATACTCTCTA 18389 | |||||||| ||||| || |||| || || || ||| | || | Sbjct 579 TTAATCCATTTAAAAGCCCAGTCAGCCTTCTTCT----TA-ACAGTTTCAATATTATCAA 633 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 |||| ||||| | ||||||||||||| ||| | |||||||| || || | | || Sbjct 634 TAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGGAGAG 693 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || ||||| || | | ||||| | || || | ||| || ||||| | | Sbjct 694 AGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTT 753 Query 18510 C-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||||| ||| | || | || | ||| | | ||||||| || || || ||| Sbjct 754 CAGGGAT-TTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCATCA 812 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GA 18625 | || ||||| || || | || ||||| ||||| ||| | |||| ||| || | | Sbjct 813 GAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAATTTA 872 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 | ||||| || | || |||| | | ||| | ||||| | | |||||| ||| | Sbjct 873 TCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCATGCT 932 Query 18686 TCGGCCTGTTTGTACATTT 18704 | || ||||||||||| Sbjct 933 TGTTGCTTTTTGTACATTT 951 >seq87644 Length=678 Score = 116 bits (128), Expect = 5e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155906 TAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 |||||| |||||||||||||| || |||||||| ||||||||||| || | |||||| || Sbjct 233 TAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAA 292 Query 155966 GCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCA 156025 ||| | |||||| ||||| ||||| || || ||||| ||||| | || ||||| Sbjct 293 GCAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCA 352 Query 156026 TTTAGTGTTAAGATTAAGAGGCGG 156049 | | || | ||||||||||| || Sbjct 353 TCTCGTCCTCAGATTAAGAGGTGG 376 >seq14831 Length=294 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155906 TAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 |||||| ||||| ||||||||||| |||||||| ||||| ||| |||| | ||| || || Sbjct 20 TAAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAA 79 Query 155966 GCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCA 156025 || |||||| ||||| ||| |||| || ||||| |||||| | || | || Sbjct 80 ATGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAGTCTACTATCCA 139 Query 156026 TTTAGTGTTAAGATTAAGAGGCGGTGT 156052 | || | ||||||||||| || || Sbjct 140 CCTTGTCCTTAGATTAAGAGGAGGAGT 166 >seq88500 Length=653 Score = 86.0 bits (94), Expect = 9e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 155801 TAATAAAAATTTATGTAATAA-AATGCAAATATTTATT-AAAACATTGACTGGAAAAACT 155858 ||||| || || | ||| || ||||||||| ||| || ||||| | |||||| |||||| Sbjct 611 TAATAGAATATTTTATAACAATAATGCAAATCTTTTTTTAAAACTTAGACTGGTAAAACT 552 Query 155859 ATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGAT 155918 |||| |||| || | | || |||| |||| || || | | ||| || || || Sbjct 551 ATTATTATAGATATCAAGCAATCAGATAGTATTGATAATGTAGAGACTAAGATTCAGGAC 492 Query 155919 AAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||| || || ||| | |||||||||||||| | ||| | || || | |||| | Sbjct 491 AAGGAAGAAATTCCACCAAATCAACAAAGATTGATCTTTGCGAGAAAATAGTTAGAAGGT 432 Query 155979 ACCAGAACTTTATCAGATTATAATAT 156004 |||||| | || || || || || Sbjct 431 GAAAGAACTCTCTCTGACTACAACAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730873433843200