Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq59922 196 9e-45 seq19544 172 1e-37 seq97248 156 8e-33 seq75063 147 4e-30 seq108602 143 5e-29 seq87644 111 3e-19 seq56753 100 6e-16 seq88500 98.7 2e-15 seq44811 84.2 4e-11 >seq59922 Length=6033 Score = 196 bits (216), Expect = 9e-45 Identities = 558/856 (65%), Gaps = 21/856 (2%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATATAAT 49649 ||| ||||||||||| ||| | | || |||| |||| || | || ||| | | ||| Sbjct 1085 CATGAAATCAAATGGGTTTGTCGCGTTG-AATACTTTT-TCGTTTCCTAATTCCAACAAT 1028 Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 |||||||| || ||||| |||| ||||| ||||| || |||| ||||| || | ||| Sbjct 1027 AATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATTAAC 968 Query 49710 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt---gtttaatt 49766 |||| || | ||| ||| |||||||||||| || ||||| || || | | ||||| Sbjct 967 TTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATAATT 908 Query 49767 atcataattatattattttttgataatttatatttaatatgattcgcatatattaaACAT 49826 || || | | | |||| | ||||| || || || | |||| ||||||| Sbjct 907 TTCTGAACT---GTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAATAAACAT 851 Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 || |||||| || || || ||||| || || || || || ||| |||| | ||| Sbjct 850 GCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCCCT 791 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 ||||| | |||||| || || | ||| | ||||| ||| || || ||||| || Sbjct 790 GGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAATT 731 Query 49947 CCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATC 50006 || || || |||||||| | | |||| || |||| | || ||||| ||| Sbjct 730 CCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAA---TGATCCTTCATC---AATC 677 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 ||| | |||||||||||||||| || | | | || | || ||||| ||||| Sbjct 676 CAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTAAAC 617 Query 50067 AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA 50126 || | | ||| || | ||||| | |||||| ||||| Sbjct 616 AAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATACGTTTCA 557 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 || || | ||| | |||| ||| || || || | |||| || | ||||||| Sbjct 556 GAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGTATACTGA 497 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 ||||| || ||||| || |||| || ||| |||||| ||||| ||||| ||||| Sbjct 496 ACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCGCGAAA 437 Query 50247 AATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAAT---TTTCCCAA-GA 50302 || || || || | ||||| |||||| ||||||||| || | | | |||||| | Sbjct 436 AAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATCCCAATCA 377 Query 50303 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 | ||| | |||| | ||| | ||||| |||||| || ||| ||| ||||| Sbjct 376 ATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCCTTTTT 318 Query 50363 ATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAttttt 50422 || | | || ||| |||| ||| |||||||| ||| ||| || | || Sbjct 317 GTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCTGTTGTTGTTCGC 258 Query 50423 ttCTAATATCGGTTCT 50438 | | ||||| |||||| Sbjct 257 TACCAATATTGGTTCT 242 >seq19544 Length=280 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | | ||| ||||| | ||| | ||| || |||||| |||||| Sbjct 47 ATTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCA 106 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | |||| || ||||| || || |||||||| ||||| |||||||| ||| Sbjct 107 GATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGT 166 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| | ||||||||| |||| ||| || ||| Sbjct 167 GGGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCG 226 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || |||||||| || ||||| || || || | ||| |||||||| || Sbjct 227 ACGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATT 279 >seq97248 Length=461 Score = 156 bits (172), Expect = 8e-33 Identities = 181/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || | | || ||||| | ||| | |||||| || || |||||| Sbjct 412 ATTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 353 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | |||| || ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 352 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGT 293 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| | || || || |||| |||||| || Sbjct 292 GGGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCA 233 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTAGA 192545 || |||| ||||| || ||||||||||| || || | || || ||||| ||| ||| | Sbjct 232 ACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTATA 173 Query 192546 AAA 192548 ||| Sbjct 172 AAA 170 >seq75063 Length=1318 Score = 147 bits (162), Expect = 4e-30 Identities = 473/730 (65%), Gaps = 25/730 (3%) Strand=Plus/Plus Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| || ||||| |||| ||||||| ||| | || | ||||||||| ||||| || Sbjct 236 TCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACC-AATAAGTT 294 Query 49712 AAATGGT-AATGCATCATCAATAAATTCtttttctatttctacagctt--gtttaattat 49768 | || || | ||| | |||||| || ||| |||| |||| || || | | Sbjct 295 CTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAAATTT 354 Query 49769 cataattatattattt--tttgataatttatatttaatatgattcgcatatattaaACAT 49826 ||||| ||| ||| ||||||| |||| ||||| || ||| | ||||| Sbjct 355 CATAA----ATTCTTTCATTTGATACCTTATTAACCATATGTTT---ATACAACAAACAA 407 Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 ||||| ||||||||||| ||||| || || || || || |||||| ||| | ||| Sbjct 408 GCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCT 467 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA-CTAGAAAAGAATAT 49945 ||||| | ||||||||| | ||| || |||| |||||| | | ||| ||||| || Sbjct 468 GGCATAAGAGATCTCTTTTTCAACCAGAAAATTG-CGCAAAAAGACCCAGAGAAGAAAAT 526 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-- 50003 || || ||||| ||||| || || | |||| | |||| | | | || ||| || Sbjct 527 TCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAA---TGAGTCAT--TCTTATTA 581 Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||||| || | |||||| || || || || || | || ||||| || ||||| ||| Sbjct 582 ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTA 641 Query 50064 AATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATT 50123 || | || |||||| | || | | ||| || || Sbjct 642 AAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGGAGAGAGTAAGTT 701 Query 50124 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC 50183 ||| || ||| ||||| |||| || ||| || ||| |||| | Sbjct 702 TCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGGATT 761 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 || ||||| | | ||| | ||||| | ||||||| ||||| |||||||| || ||| Sbjct 762 TGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCATCAGAAGCAGCG 821 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CCAA 50300 ||||| || | |||||||| || || ||| | |||| ||| ||||| || || |||| Sbjct 822 AAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAATTTATCATTCCAA 881 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 || | ||| | ||||||| ||||| | |||||| ||||| ||| Sbjct 882 TCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCATGCTTGTTGCTTT 941 Query 50361 TTATACATTT 50370 || ||||||| Sbjct 942 TTGTACATTT 951 >seq108602 Length=371 Score = 143 bits (158), Expect = 5e-29 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 ||||| ||| ||| || |||||||| | | || ||||| | ||||| ||||| Sbjct 108 TTTAGATTAG-AAT-CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGA 165 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||| |||| |||| | || || |||||||| ||||||||||| | |||| Sbjct 166 ATGTTATAATCTGATAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTC 225 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| ||||| ||||||||||| || ||| | || ||||| || | Sbjct 226 TGTTGGTCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTG 285 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || |||| || |||||||| ||||| | || |||| ||| |||||| Sbjct 286 TCAGATTGTTCAACATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGC 345 Query 192535 ATT 192537 ||| Sbjct 346 ATT 348 >seq87644 Length=678 Score = 111 bits (122), Expect = 3e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||||||| |||| | |||| || ||||| || || |||||||||||||| Sbjct 331 ATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTT 272 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||| || || ||||||||||||||||| |||||| Sbjct 271 TGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTA 233 >seq56753 Length=203 Score = 100 bits (110), Expect = 6e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 192331 AAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAAT 192390 ||||| | ||||| || || || |||||||||||||| ||| | |||| |||||| Sbjct 152 AAATGAAGAGTAGATTCCTTCTGAATGTTATAATCAGATAAGATTCTTCCATCTTCCAAT 93 Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||| |||||||||| | | |||| |||| |||| ||||||||||| ||||| || Sbjct 92 TGTTTTCCAGCAAAGAGGAGTTTCTGATGATTTGGTGAAATTCCTTCTTTGTCTTGGATC 33 Query 192451 TTATTTTTTA 192460 ||| | |||| Sbjct 32 TTAGTCTTTA 23 >seq88500 Length=653 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| | |||| |||| | || || | ||| | |||||||| ||||| Sbjct 406 ATGTTGTAGTCAGAGAGAGTTCTTTCACCTTCTAACTATTTTCTCGCAAAGATCAATCTT 465 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||||| ||||| ||| |||| || || || || ||| | | ||||||| ||| | Sbjct 466 TGTTGATTTGGTGGAATTTCTTCCTTGTCCTGAATCTTAGTCTCTACATTATCAATACTA 525 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT-TAATGTTTTAATAAATATCTG 192533 ||||| | | |||| | |||| ||||||||||| ||| ||| || ||| || || Sbjct 526 TCTGATTGCTTGATATCTATAATAATAGTTTTACCAGTCTAAGTTTTAAAAAAAGATTTG 585 Query 192534 CATT-TTATTAGAAAA 192548 |||| || ||| |||| Sbjct 586 CATTATTGTTATAAAA 601 >seq44811 Length=222 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | | || || || | ||||| || || || || || || Sbjct 44 ATTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCG 103 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || |||||||| || ||||||||||| | ||| |||||||| ||| Sbjct 104 GAGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGT 163 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || ||||||||||| || || || ||| | || || || || | ||||||| Sbjct 164 GGAATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATCTGAC 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983103194875200