Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq59922 203 6e-47 seq108602 161 2e-34 seq97248 150 3e-31 seq87644 98.7 2e-15 seq44811 93.3 8e-14 seq88500 91.5 3e-13 >seq59922 Length=6033 Score = 203 bits (224), Expect = 6e-47 Identities = 602/929 (65%), Gaps = 26/929 (3%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||||||| |||| | ||||| || ||||| ||||| |||| | ||| || | Sbjct 1148 TTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAAATCAT 1089 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATAT 38948 | ||| ||||||||||| ||| | | || |||| |||| || | || ||| | | Sbjct 1088 TTCCATGAAATCAAATGGGTTTGTCGCGTTG-AATACTTTT-TCGTTTCCTAATTCCAAC 1031 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || ||||| |||| ||||| |||| || |||| ||||| || | | Sbjct 1030 AATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCGATT 971 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt---gttta 39065 || |||| || | ||| ||| |||||||||||| || ||||| || || | | || Sbjct 970 AACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAGGATA 911 Query 39066 attatcataattatattattttttgataatttatatttaatatgattcgcatataGTAAA 39125 ||| || || | | | |||| | ||||| || || || | |||| |||| Sbjct 910 ATTTTCTGAACT---GTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTATAATAAA 854 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 ||||| ||||| || || |||||||| || || || || || ||| |||| | Sbjct 853 CATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGC 794 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| | |||||| || || | ||| | ||||| ||| || || ||||| Sbjct 793 CCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAA 734 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 || || ||||| |||||||| | | |||| || |||| | || ||||| | Sbjct 733 ATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAA---TGATCCTTCATC---A 680 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 |||||| | ||||||||||||||| || | | | || | || ||||| ||| Sbjct 679 ATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGCATTA 620 Query 39366 AATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 || || | | |||||| || Sbjct 619 AACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATACGTT 560 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAA--TGAATAAAATTGCCTTGCTTCTGAAT 39483 ||||| || | ||| | |||| ||| || | | |||| | |||| || | || Sbjct 559 TCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAAT--TTTGCCTCAGTAT 502 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||||||| || ||||| || |||| || ||| |||||| ||||| ||||| | Sbjct 501 ACTGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGCCG 442 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAAT---TTTCCC 39600 |||| || || || |||| ||||| |||||| ||||||||| || | | | |||| Sbjct 441 CGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATCCC 382 Query 39601 AA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || | | ||| | |||| | ||| | ||||| |||||| ||| ||| ||| Sbjct 381 AATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGGCC 323 Query 39660 TTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTA 39719 ||||| || | | || ||| |||| ||| ||||||| ||| ||| || | Sbjct 322 TTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCTGTTGTTG 263 Query 39720 tttttttCTAATATCGGTTCTCGTATGCT 39748 || | | ||||| |||||| || |||| Sbjct 262 TTCGCTACCAATATTGGTTCT-GTTTGCT 235 >seq108602 Length=371 Score = 161 bits (178), Expect = 2e-34 Identities = 183/243 (75%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 171828 TTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887 ||||| || | ||| || |||||||||| | || ||||| | ||||| ||||| | Sbjct 108 TTTAGATT-AGAAT-CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGA 165 Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||||| || || |||| || |||||||| |||||||| || | |||| Sbjct 166 ATGTTATAATCTGATAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTC 225 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| ||||| ||||||||||| || ||| | || ||||| || || Sbjct 226 TGTTGGTCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTG 285 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || |||| || |||||||| ||||| | || |||| || |||||| Sbjct 286 TCAGATTGTTCAACATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGC 345 Query 172068 ATT 172070 ||| Sbjct 346 ATT 348 >seq97248 Length=461 Score = 150 bits (166), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| |||| | || ||||| | ||| | |||||| ||| || ||||| Sbjct 412 ATTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 353 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || ||||| || ||||| || || ||||||||||| || ||| Sbjct 352 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGT 293 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| | || || || ||||||||||| || Sbjct 292 GGGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCA 233 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATA 172078 || |||| ||||| || ||||||||||| || || | ||| || ||||| ||| ||||| Sbjct 232 ACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTATA 173 Query 172079 AAA 172081 ||| Sbjct 172 AAA 170 >seq87644 Length=678 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | || | || | ||| | |||| ||||| |||||| || || ||| Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || || ||||| || || ||||| |||||||| ||||| || || || Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 171963 ATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||||||||| |||||| Sbjct 256 ATTCCTTCTTTATCTTGAATTTTA 233 >seq44811 Length=222 Score = 93.3 bits (102), Expect = 8e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||||| | || || || | ||||| || || ||| || || || Sbjct 44 ATTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCG 103 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||||||| || |||||||| || | ||| ||||| || ||| Sbjct 104 GAGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGT 163 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||||||||| || || || ||| | || || || || ||||||||| Sbjct 164 GGAATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATCTGAC 217 >seq88500 Length=653 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||| |||||| | | ||||| || || || | | ||| || || || Sbjct 358 ATACCGCCTTTAAGTCTAAGGATCAAATGAGGAGGAGACTTTCTCTGAATGTTGTAGTCA 417 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || ||| | || || | ||| | ||||| || ||||| ||||| | ||| Sbjct 418 GAGAGAGTTCTTTCACCTTCTAACTATTTTCTCGCAAAGATCAATCTTTGTTGATTTGGT 477 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||| |||| || || || || ||| | | ||||||| ||| ||||||| | Sbjct 478 GGAATTTCTTCCTTGTCCTGAATCTTAGTCTCTACATTATCAATACTATCTGATTGCTTG 537 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT-TAATGTTTTAATGAATATCTGCATT-TTATTAT 172077 | |||| | |||| ||||||||||| ||| ||| || || || |||||| || |||| Sbjct 538 ATATCTATAATAATAGTTTTACCAGTCTAAGTTTTAAAAAAAGATTTGCATTATTGTTAT 597 Query 172078 AAAA 172081 |||| Sbjct 598 AAAA 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903901032441600