Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq105687 129 2e-25 seq60829 84.2 7e-12 >seq105687 Length=390 Score = 129 bits (142), Expect = 2e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 ||| || | ||||| ||| ||||||||||| || ||||||||||| || |||||||| | Sbjct 208 GAAATCCACGTCGAAATCCGGCATGGACACCCGTTCGGGGTTCAGAAAGCGCTCGAACAG 149 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 | ||| |||||||| ||||| ||||| ||| | || ||| || ||||| || || Sbjct 148 CAAGTCGTATTCCAGCGGATCGAGATCGGTAATCTCCAGCGAGTACGCCACCAGTGAGCC 89 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | ||||| ||||| ||||| ||| || |||| || |||||||||||||| Sbjct 88 GGCACCGGAGCCACGCCCCGGGCCCACCGGGATATCGTTGCGTTTAGCCCAGCGGATGAA 29 Query 40970 GTCC 40973 |||| Sbjct 28 GTCC 25 >seq60829 Length=4246 Score = 84.2 bits (92), Expect = 7e-12 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 ||| |||| ||||| || ||||| || || || ||||| || || || || ||||| | Sbjct 2418 GAAATCGACGTCGAAGTCAGGCATTGAGACCCGTTCGGGATTAAGAAATCGTTCGAATAA 2477 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || || | |||||| | ||||| || || |||||||||||| || || Sbjct 2478 CAGAATATGTTCTATCGGGTCTAAATCGGTAATTTTAAGTGCGTAGGCGACCAATGATCC 2537 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | ||||| | || || ||||| ||| | || || || ||||| | || || Sbjct 2538 GGCGCCCGAGCCCCTGCCCGGCCCGACAGGAACGTCATTTTCTTTGGCCCATTGAATAAA 2597 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT 41005 |||||| |||| | ||| || ||||| ||||| Sbjct 2598 GTCCGCTACGATTAAGAAATAACCGGGGAAACCCAT 2633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164631131467136