Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq83019 154 7e-33 seq71741 114 6e-21 >seq83019 Length=855 Score = 154 bits (170), Expect = 7e-33 Identities = 313/459 (68%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 65062 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGA- 65120 ||| ||||||| ||||| ||| || |||||| |||||||| ||||||||||| ||||| Sbjct 728 GTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGCGACATGGGGGAT 669 Query 65121 -CAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCA 65179 || | || |||||||| || ||||| ||| ||||| |||||||||| || || Sbjct 668 TCACTGCCG--GGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGTT 611 Query 65180 CCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 65236 | || |||| ||| | || | ||| ||| |||||||| | ||| |||||||| Sbjct 610 CGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCG 554 Query 65237 GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACG 65296 || | || | |||| ||| || || |||||||| || || ||| ||||| Sbjct 553 GCGTCATG---TTCGGCAACCCTGAAACAACAACGGGCGGCAATGCGCTGAAATTCTATT 497 Query 65297 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 65356 | || || || | || | || ||||||| | | ||||| | || || | || | Sbjct 496 CGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTGACGAAGTGGTGG 437 Query 65357 GCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCG 65416 | |||| ||||| || || || || ||||||||| | || ||||| |||| | | | Sbjct 436 GTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCATTCCGCCAGGTTG 377 Query 65417 AGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCG 65476 ||||| || |||| || ||||| || || | | || | |||||||| | | Sbjct 376 AGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGCTCGACCTTG--G 319 Query 65477 TGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 65513 |||| | | ||| | || | ||||||||| ||||||| Sbjct 318 TGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 >seq71741 Length=1598 Score = 114 bits (126), Expect = 6e-21 Identities = 278/416 (67%), Gaps = 9/416 (2%) Strand=Plus/Plus Query 64990 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65049 ||||| |||| ||| || ||||| || ||||||| ||| || || ||||| | | Sbjct 838 CAGCCAGACAATGGTGAACAGGCGCTTGAGATCGCTGATACGCTTGTACGCTCTGGTGCG 897 Query 65050 CTGTC-CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65108 ||| ||| | ||| ||||||| || || || || ||| || |||||| | ||||| Sbjct 898 -TGTGACATTCTTGTCATTGACTCGGTTGCTGCTCTAACGCCTCGTGCCGAGATTGAAGG 956 Query 65109 CGACATCGGGGACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65166 || || || || ||| | || || || ||||| | ||| || || ||||| Sbjct 957 TGAAATGGGCGAT--TCATTGCCTGGTCTTCAGGCGCGTTTGATGAGCCAAGCTTTGCGC 1014 Query 65167 AAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 65226 || | ||||| | || || | ||||||| || | | ||||||| | || Sbjct 1015 AAATTGACTGGTTCAATTTCACGTTCCAACACAATGGTTATTTTCATCAACCAAATCCGT 1074 Query 65227 GAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTG 65286 ||| ||||| ||| | |||| | || || || || ||||| || |||||| Sbjct 1075 ATGAAAATCGGT---GTGATGTTCGGCTCTCCCGAAACAACAACCGGCGGTAACGCTTTG 1131 Query 65287 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 65346 | |||||| || || |||||| ||||| | || || || | | | | || || | || Sbjct 1132 AAGTTCTATGCGTCTGTCCGCTTGGATATTCGCCGTATTGGCGCAGTCAAAGACCGAGAC 1191 Query 65347 GAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 65402 |||| ||| ||||||| || || || ||||||||||| ||||| || || ||||| Sbjct 1192 GAGGTTGTTGGCAACCAGACACGCGTCAAAGTCGTCAAAAACAAACTTGCGCCGCC 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238632526672384