Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq64137 215 2e-50 seq63919 138 3e-27 seq3443 132 1e-25 >seq64137 Length=2701 Score = 215 bits (238), Expect = 2e-50 Identities = 555/830 (67%), Gaps = 23/830 (3%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || | ||||||||||| ||||| ||||||||||| || || | ||||| ||||| Sbjct 1469 TGTACTCCATGATCTCACAGCAGAGGTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGT 1410 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 ||||||| | ||| | |||||| || || ||||||||| ||| ||||| ||||||| Sbjct 1409 TAGATTTTCCATTAGCATGATCCTTATACAGCATGTATGGGACTCCAGTCTCTATCTGTG 1350 Query 155749 CGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 || || || | || ||| || | | || || | ||| | | | ||||| Sbjct 1349 ACTCAAGGATGGCATT--CCATAGATGTTGTGCCTTGACAGTCTTTCTTCCTTTTCCTTC 1292 Query 155807 CGACTCATATTTCATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCA 155864 | |||||||||| || || |||| || || | || || || || | Sbjct 1291 AGTCTCATATTTCTCAT--AGAGTTCTTCAAATTCTTTTCCCCAAGTTTCGAACAATTGG 1234 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAAT 155924 ||||| | || || || || || | ||| || || | | ||| | | ||| ||| Sbjct 1233 GGGCATTCATTTGGACAGAAGAGTGTCCAGTCTTCATCAGCTTCTACTCTCCTCATGAAT 1174 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTG 155983 | |||||| |||| | ||| ||||| ||||| ||||| || || || || | || || Sbjct 1173 ATATCACTAACCCACAAAGCGTAGAAGAGGTCTCTTGCTCTCTG-TTCATCTTTACCATG 1115 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||||| | | | ||| || | |||||| ||||| ||| || || || ||||| Sbjct 1114 GTTCTTCCTCAAGTTAAGGAAGTCATAAATATCTGGATGCCATGGTTCGAGGTAGATAGC 1055 Query 156044 AAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 ||| || || ||||| ||| || || || ||||| | ||||| | ||||||||| Sbjct 1054 GAAAGCTCCCTTTCTCTTACCGCCTCCTTGGTCAACATATCTTGCAGTGTCATTGAAGAC 995 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTG-CCATTGGTTCCGCGAATATGCGAACCAG 156159 | ||||| || | || ||||| | |||| || || ||||| | || | ||| || Sbjct 994 CCTAAGCATTGGGACAAGTCCATTTG-AGTGACCGTTTGTTCCTCTGATGTAGGAAGAAG 936 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGC 156217 ||| | || | |||| | | |||||| || || | ||| ||||| || ||| Sbjct 935 TTGATCTAATACAGTGAACAGCCAATCCAATTCCTCC--AGCATTCTTAGAGATAATAGC 878 Query 156218 GCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATA 156277 |||| | || || | |||||| |||||||| |||||||| ||||| || || | | Sbjct 877 ACATTGTTGTAATGTTTCGAAAATTCCTTCAATTGAATCATCCCGCATTGCTAATAAAAA 818 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337 ||| ||||| | ||| ||| ||| || ||||| || || || || ||||| || || | Sbjct 817 GCATGAACTCATTTGTGGTTTTGGGGTACCAGCATTAAAGAGGGTTGGTGTGGCGTGTGT 758 Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACCCG 156395 || | || | | ||| ||| |||||||| | | |||| ||| | | | Sbjct 757 GAACCATTTCTGACTCATGAGATCATATGTCTCAAATGCAGATTCT-AAG-TCATTCTTA 700 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 ||||||| |||||||| ||||| ||| ||| || | ||| ||||| Sbjct 699 TGAATACCAATAGAGACTCTCATAAGCATTGTCTGTGGTCTCTCAACAAT 650 >seq63919 Length=2755 Score = 138 bits (152), Expect = 3e-27 Identities = 335/497 (67%), Gaps = 18/497 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | | |||||||| ||||| ||||| |||||| || || Sbjct 1668 CTATCAAATCTTCCTGGTCTAAGTAATGCTGAATCTAAAATATCCTTTCTGTTGGTAGCA 1609 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATT--TGA 288966 |||| |||||| | ||| | | || | |||||||||||| || | || | ||| Sbjct 1608 GCCAGTACAACTACTGATGAG-TCTGTTCCAAATCCATCCAT--TTCTACAAGTAACTGA 1552 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || || || | || |||||||||||| || || | | || | ||| |||| Sbjct 1551 TTGAGAGTATTGTCTCTTTCATCATTTCCTCCAGTTAATTTTCCAG-----CTC-TTTTC 1498 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 |||||||||||||| || || |||||||| || | | | || ||||| | ||| || | Sbjct 1497 TTACCAACAGCATCGATCTCATCAATGAAGATGATAGATGGTGAATTCTCTCTTGCTTTC 1438 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| |||||||| | || ||||| | |||||| ||||||| ||||| || ||| Sbjct 1437 TTGAATAAATCTCTTACTCTTGAGGCTCCTACACCAACGAACATTTCAACAAAGTCTGAA 1378 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | |||| | ||||| | ||||| || || || | || || | || Sbjct 1377 CCAGA-AATTGATAAGAATGGAATTCCGGCTTCTCCAGCAGTAGCTTTAGCAAGCATAGT 1319 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || ||||| || || ||||| || | | | || |||| | |||||| ||| || Sbjct 1318 TTTTCCTGTACCTGGAGGTCCAATCAACAAAGCACCTCTTGGAATTTTTGCGCCA--AGT 1261 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || |||||||| || | || || || || |||| |||| || ||| |||| || Sbjct 1260 TTTTGATATTTCTTTGGATTTTTCAAGAAATCCACAAATTCCATAATTTCTAATTTAGCT 1201 Query 289324 TCATCACATCCTGCTAC 289340 |||| |||||| || Sbjct 1200 GAATCAAGTCCTGCAAC 1184 >seq3443 Length=346 Score = 132 bits (146), Expect = 1e-25 Identities = 236/341 (69%), Gaps = 5/341 (1%) Strand=Plus/Minus Query 156035 ATACATAGCAAAACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTT 156091 ||| |||||||||||||| || | ||| ||||| ||||||||| || || ||||| | Sbjct 346 ATAGATAGCAAAACTACCCTTACGCTTTCCACCGCCCTGATCTACGTAACGCGCAGTATC 287 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATAT 156150 || || || ||||| || | ||||||||||||||| |||||||| || ||| |||| Sbjct 286 GTTAAAAACCTGCAGCATGGGCACAATACCATTGGAAGTCCCATTGGTACCTGCG-ATAT 228 Query 156151 GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 ||||| | | || ||||| || || || || || || || | ||| |||| Sbjct 227 AAGAACCTGTGGCCCGTACATTGTGTATGGAAAGACCTATCCCGCCAGCAGATTGTGAAA 168 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATA 156270 ||| || || |||| |||| ||||||| |||||| ||| || | ||||| | Sbjct 167 TTTTTGCCGTTTGTTTTAGCGTATCATAAATACCATCAATACTATCGTCCTTCATTGCCA 108 Query 156271 GTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 || | || || | ||||||| || || || | || || | |||||||| | Sbjct 107 AAAGGAAACAAGAGGACATTTGAGGTTTAGGGGTACCCGAATTAAACAAGGTAGGTGTAG 48 Query 156331 CATGAATAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 | || |||||||||| || ||||| | || || |||||| Sbjct 47 CGTGGGTAAAATACTTTTTGGACATCAACTCATAGGTCTCC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469759248368224