Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq105687 134 4e-27 seq60829 84.2 7e-12 seq30157 80.6 9e-11 >seq105687 Length=390 Score = 134 bits (148), Expect = 4e-27 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 ||| || | ||||| ||| ||||||||||| || ||||||||||| ||||||||||| | Sbjct 208 GAAATCCACGTCGAAATCCGGCATGGACACCCGTTCGGGGTTCAGAAAGCGCTCGAACAG 149 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 | ||| |||||||| ||||| ||||| ||| | || ||| || ||||| || || Sbjct 148 CAAGTCGTATTCCAGCGGATCGAGATCGGTAATCTCCAGCGAGTACGCCACCAGTGAGCC 89 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | ||||| ||||| ||||| ||| || |||| || |||||||||||||| Sbjct 88 GGCACCGGAGCCACGCCCCGGGCCCACCGGGATATCGTTGCGTTTAGCCCAGCGGATGAA 29 Query 40430 GTCC 40433 |||| Sbjct 28 GTCC 25 >seq60829 Length=4246 Score = 84.2 bits (92), Expect = 7e-12 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 ||| |||| ||||| || ||||| || || || ||||| || || || || ||||| | Sbjct 2418 GAAATCGACGTCGAAGTCAGGCATTGAGACCCGTTCGGGATTAAGAAATCGTTCGAATAA 2477 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || || | |||||| | ||||| || || |||||||||||| || || Sbjct 2478 CAGAATATGTTCTATCGGGTCTAAATCGGTAATTTTAAGTGCGTAGGCGACCAATGATCC 2537 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | ||||||| || || ||||| || | || || || ||||| | || || Sbjct 2538 GGCGCCCGAGCCCCTGCCCGGCCCGACAGGAACGTCATTTTCTTTGGCCCATTGAATAAA 2597 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT 40465 |||||| |||| | ||| || ||||| ||||| Sbjct 2598 GTCCGCTACGATTAAGAAATAACCGGGGAAACCCAT 2633 >seq30157 Length=251 Score = 80.6 bits (88), Expect = 9e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 40326 GGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGC 40385 || ||||| || || ||| | || || || || ||||||||||| || |||| || || Sbjct 238 GGATCGAGATCAGTAATCTCAAGCACATAAGCCACCAGCGAACCCGCACCAGAACCGCGA 179 Query 40386 CCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGG 40445 || ||||| || | ||| | ||| ||||||||||| |||||| ||||| ||| Sbjct 178 CCGGGGCCCACAGGAATATCGTGTTGCTTGGCCCAGCGGATAAAGTCCATGACGATAAGG 119 Query 40446 AAGTACGACGGGAACCCCATCTGGATGAT 40474 || || || ||||||||||| | ||| Sbjct 118 AAATAGCCAGGAAACCCCATCTGTACGAT 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163113101660736