Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq60379 158 2e-33 seq59718 116 5e-21 seq19780 107 3e-18 seq106576 100 4e-16 >seq60379 Length=4852 Score = 158 bits (174), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 || || ||||||||||| || | |||| | || ||||| |||||||||||| | ||| Sbjct 2005 GATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGATTTGAGC 1946 Query 99012 GAAGGTTTCCCGCTGGT---AACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAA 99068 |||||||| ||||| || ||||| |||| | || |||| || |||||| || Sbjct 1945 GAAGGTTTTCCGCTCGTGACAACGAAAAAGCTT---CATTTGCGGTCGATTATCATCGAG 1889 Query 99069 CTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACC 99128 || | ||||||||| ||||| |||||||| | || ||||| ||||| || | Sbjct 1888 CTTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGTGTCG 1829 Query 99129 ATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGG 99188 |||||||| || ||||| || |||||||||| || || ||||||||||| | |||||| Sbjct 1828 ATTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATATCAGTGG 1769 Query 99189 CGGGCATGGACTGCGCATGATG 99210 || ||||| | |||| |||| Sbjct 1768 CGCTCATGGCCAGCGCCAGATG 1747 Score = 122 bits (134), Expect = 1e-22 Identities = 227/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| | || || ||||||||||||||| || || | || || |||||||| || || Sbjct 1591 AAGCTTTCATGCCAGCTCTATCAGCGTTCGGCGGATATCTTTTTAGGTGTGCCATTCAAT 1532 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 |||||||| ||||| || || | |||||| |||||||| | | | | |||||| Sbjct 1531 ATCGCGTCCTATGCGCTTCTTACGCACATGATTGCACAGGTGTGTGACCTTGAGGTGGGT 1472 Query 99705 GATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGG-CACG 99763 |||||||| || || |||| |||| ||||||| |||||| | || |||| ||| Sbjct 1471 GATTTCGTGCATACACTTGGGGATGCGCATTTGTATTCGAACCATTTCGAGCAGGTCAC- 1413 Query 99764 TACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGA 99823 |||||| | | || | || || ||||| ||| ||| || || | | | Sbjct 1412 AACTCAGCTTGAGCGGGCGCCAAAAGCTTTGCCAAAGTTGAAAATAAATCCCGATGTGAG 1353 Query 99824 CTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGC 99883 | | |||| | || ||||| |||||||| || ||||| || || || || ||| Sbjct 1352 AGCGCTTATCGATTTCAAATTCGAGGATTTTGAAATTGAAGGTTATGAACCGCATCCGCA 1293 Query 99884 TATTAAAGCACCGGTGGCGATATGAGTAATA 99914 ||| ||||| |||||||| ||||| |||| Sbjct 1292 TATCAAAGCGCCGGTGGCAGTATGAAAAATA 1262 >seq59718 Length=6799 Score = 116 bits (128), Expect = 5e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 98950 AAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGC 99009 |||| || || || ||||| || || | || ||| |||| |||||||| | ||| Sbjct 2256 AAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGA 2197 Query 99010 AAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAA 99068 | |||||||| ||| | || || || ||||| || | | || ||||| || ||| Sbjct 2196 ACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGC-ACTTAAGATCGATTATTCACGAA 2138 Query 99069 CTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACC 99128 || | |||||| || ||||||||||||| ||| |||| || ||||| | || | Sbjct 2137 CTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAA 2078 Query 99129 ATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGG 99188 |||||||||||||||||||| || |||| |||| ||||| || ||||| | || ||| Sbjct 2077 ATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGG 2018 Query 99189 CGGGCATGGACTG 99201 | | ||| ||| Sbjct 2017 AGATCTTGGCCTG 2005 >seq19780 Length=279 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 99045 CACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAG 99104 ||||| ||||| || ||| |||| |||||||||||||| ||||| ||||| ||| || Sbjct 257 CACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGCGATACCAACATCAAG 198 Query 99105 TACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTC 99164 | ||||| || || || || || ||| | |||||||| || | || || || ||| Sbjct 197 TGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGATGAGAACGGTGATCTC 138 Query 99165 GGTCCGGTATACGGTAAGCAGTGGCGGGCATGGACTGCGCATGA 99208 || ||||| || ||| | ||||||||| ||||| | || | ||| Sbjct 137 GGCCCGGTCTATGGTCACCAGTGGCGGTCATGGCCGGCACGTGA 94 >seq106576 Length=385 Score = 100 bits (110), Expect = 4e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| |||||||| || || ||||| | | || || | |||||||| ||| | Sbjct 288 AAGAGTGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGATGCGGTTCGAT 229 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 || ||||| ||||| ||||||| || || | ||||| |||||||| || Sbjct 228 TTAAGTGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAATCTATTATTTAT 169 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 || || || |||||| | || || ||||||||||| | || || |||| || || || Sbjct 168 GAGCTTCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAGAGAACGGAGTT 109 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 ||| ||| | || ||||| ||| ||||||| ||| | || || ||||| || | || Sbjct 108 CGCATCTGGAATGATTGGGCAGACGAAAATGGTGACTTAGGCCCAGTATATGGCCACCAA 49 Query 99186 TGGCG 99190 ||||| Sbjct 48 TGGCG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715659020750080