Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq78207 84.2 2e-11 seq85905 82.4 8e-11 >seq78207 Length=1114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||| |||||||||| ||| ||||| ||||||||||||||||| |||| |||||||| Sbjct 875 TGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGAT 816 Query 9832 TCCGCTATTCTCCA 9845 ||| ||| ||||| Sbjct 815 CCCGTTATCCTCCA 802 >seq85905 Length=734 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 18 GGGGCGTTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGAAC 77 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 78 CCGTTACGCTCCA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548872495197440