Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq60466 203 8e-48 >seq60466 Length=4684 Score = 203 bits (224), Expect = 8e-48 Identities = 405/593 (68%), Gaps = 9/593 (2%) Strand=Plus/Plus Query 36197 TACATCGGTGGCAAGCGCGTTCTCTCAAAGATCATCATCGCCAAGATCAACGCAACACGT 36256 || || || ||||||||| | ||||| ||| | | |||| ||| |||| || | Sbjct 13 TATATTGGCGGCAAGCGCATGCTCTCCAAGCGCCTTGTCGCGCTGATTAACGACACGCCA 72 Query 36257 CATGAGGGTTATGCGGAAGTCTTCGTCGGTATGGGTGGCGTCTTCCTCCGCCGTGATCTC 36316 || || ||||| |||| |||||||| ||||| ||||| ||| || || | | Sbjct 73 CACACCGGCTATGCAGAAGCGTTCGTCGGCATGGGAGGCGTGTTCTTCAAACGCACTTTG 132 Query 36317 CAGCCTCGTATTGAAGTCATCAACGATATCAGCGGCGATGTGGCTAATCTGTTCCGTATT 36376 | || |||| |||||| ||||| |||||||||||| | |||||||||||||| Sbjct 133 AAACCCAAGTCAGAAGCCATCAATGATATTAGCGGCGATGTGACAAATCTGTTCCGTATC 192 Query 36377 CTCCAGCGCCACTATCCGCAGTTTATGGAAACCCTTCGGTTCCAGATCACGTCACGACGC 36436 || |||||||| ||||| ||||| ||||| || || | |||| |||| || || ||| Sbjct 193 CTTCAGCGCCATTATCCTCAGTTCATGGATACGCTGAAATACCAGCTCACATCGCGGCGC 252 Query 36437 GAGTTCGAACGGCTCTC-GAAAGTCGATCCTTCGACGCTAACCGACCTGGAGCGCGCCGC 36495 ||||| ||||| | || | ||| | | |||| || || ||||| |||||||||| || Sbjct 253 GAGTTTGAACGCTTGTCTGCAAG-CAAAGCTTCCACACTCACCGATTTGGAGCGCGCAGC 311 Query 36496 TCGCTTCCTCTATCTCCAGCGCACTGCCTTCGGCGGTAAGGTTGCGGGGCAAAACTTCGG 36555 || ||| | ||||| ||| ||||| || || || ||||| | || || || || || Sbjct 312 GCGTTTCATTTATCTGCAGAAGACTGCTTTTGGTGGCAAGGTAACTGGCCAGAATTTTGG 371 Query 36556 CGTGAC-GATGACCGGC--GCTCGCTTCAATCTTCTGAAACTCGCCCCCCAACTGGAAGC 36612 | | | | || || | || ||||||||| | || | ||| | ||||||| Sbjct 372 CATATCAAACGAGCGTCCAGCACGCTTCAATATCAATCGTCTTGGCCCTCTGCTGGAAGA 431 Query 36613 GATCCACGAGCGGATGGCAGGTGTTGTCATCGAGCAGTTGCCATGGCGAAAATTTGTCGA 36672 | ||||| || || | || ||| || ||| | |||| ||| |||| | Sbjct 432 TGTTCACGAACGTCTGTCTGGCGTTACAATTGAGAACCTGCCGTGGTCTGAATTCATTAG 491 Query 36673 GCGCTATGATCGGCCGGGGATGCTTTTTTATCTCGATCCGCCCTATTGGGGGAATGAGAA 36732 ||| | ||||| || ||| | || |||||||| ||||| ||||||| ||||| | Sbjct 492 GCGATGGGATCGTAAAGGCATGTTGTTCTATCTCGACCCGCCTTATTGGGACAATGAAAC 551 Query 36733 GGACTATGGCACGGGCGTATTCGGTCG--TGAGGAGTTTGGCGAAATGGCCGA 36783 ||||| || || ||||| ||| ||| || || |||| |||||||||| Sbjct 552 TGACTACGGGACCGGCGTGTTC--TCGAAAGATGATTTTGCGCAAATGGCCGA 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119333122044160