Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq84473 159 1e-34 seq59983 105 2e-18 >seq84473 Length=793 Score = 159 bits (176), Expect = 1e-34 Identities = 251/359 (70%), Gaps = 3/359 (1%) Strand=Plus/Plus Query 31448 CCGCCCTGACTGTCG---AGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCG 31504 |||||||| | | || ||||| || || | ||||||| | || ||| || ||| Sbjct 376 CCGCCCTGGCGGCCGTCCAGCATTACGAGGGTTGAATTGAAGTTCTGCAGCACGACCTCG 435 Query 31505 GTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCG 31564 || | ||||| ||| || || || |||||| |||||||| |||| | ||||| Sbjct 436 GTGGAATAGCGGTCATTGCCATCCCTGTCCTGCCATTTGCGGGTCTGCAATTGCCCCTCC 495 Query 31565 ATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTG 31624 | ||| ||||| || || |||||||| |||||||| |||||| || ||||||| Sbjct 496 AGGTAGACCTTGGAGCCTTTTTTCAGATATTGCTCAACCACCTTGCACAGGCCTTCGGAA 555 Query 31625 AAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGC 31684 |||| || || ||||||| ||||| || || || ||| | |||||||||| Sbjct 556 AAGATCACCACTGTATGCCATTCGGTTTTTTCGCGACGCTCCCCGGAATTGCGGTCGCGC 615 Query 31685 CAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGG 31744 ||| | || || || |||| ||| ||| |||||||| | || | || || | ||| Sbjct 616 CAGGTCTCCGACGTGGCAATGCGCAGGTTGGCGATGGGCCGGCCATCCTGCGTGTGGCGG 675 Query 31745 ATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 ||||| ||||| || || |||| |||||| || || || ||||||| ||||||||| Sbjct 676 ATTTCAGGATCAGCACCCAGATTGCCGATCAGGATTACCTTGTTGATTGAACCGGCCAT 734 >seq59983 Length=5794 Score = 105 bits (116), Expect = 2e-18 Identities = 129/173 (75%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 31502 TCGGTTGTGTAGCGATCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCC 31560 ||||||| ||| |||||| ||| | |||| | |||||| || |||||||| | |||||| Sbjct 329 TCGGTTGAGTAACGATCATTACCCTGCGGA-TCCTGCCATTTTCGGGTTTGTAACTTGCC 271 Query 31561 CTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTC 31620 |||||||| ||||| || |||||||| ||||| | || || | | | || | | Sbjct 270 TTCGATGTAGACCTTTGAGCCCTTTTTAAGGTACTCGCCGGCCACTTCGCCAAGGCGAT- 212 Query 31621 GGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGT 31673 |||| | | || |||||||||||||||||||| | ||| |||||| ||| Sbjct 211 --TGAACAAGGTGATTCTATGCCACTCGGTGCGCTCTTGGCGCTCGCCGGTGT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169584702414336