Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq59810 131 1e-25 seq8490 123 2e-23 seq59433 82.4 5e-11 >seq59810 Length=6408 Score = 131 bits (144), Expect = 1e-25 Identities = 191/269 (71%), Gaps = 16/269 (6%) Strand=Plus/Minus Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACT-TCTGTATTAGTATTCTCAGC 96215 ||||| || ||||||||||| || ||||||||||| | | | | || ||| || Sbjct 5408 TGAGCCAAAACTGTAGCTGTTGTCGTTCCATCTCCAGCAATATCCGCT-GTTTTCGATGC 5350 Query 96216 TACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCT 96275 |||| ||| | ||||||||| || | || |||| ||||||| || | ||||||| | Sbjct 5349 AACTTCTTTTACCATTTGAGCGCCCATATTCTCAACAGGATCTTTCAACTCAATTTCTTT 5290 Query 96276 AGCCACACTTACACCATCTTTAGTAATGATTGGATTATACTGGTCTAAA-------CCTA 96328 || ||| | ||||||||||| |||||| || || || ||| || | Sbjct 5289 TGCAACAGTAACACCATCTTTCGTAATGTGCGG-------TGCTCCAAACTTTCTTCCAA 5237 Query 96329 GTATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAAAGCATCTA 96388 | |||||| | ||| |||||||| ||||||||||||||||| || | ||||| | Sbjct 5236 CAACAACATTTCTTCCTTTTGGTCCTAATGTTACTTTAACTGCATTTGCAAGTGCATCAA 5177 Query 96389 CACCTCTCTTTAAGGCTTCTCTTGATTCT 96417 |||||||||| ||||| ||||| | |||| Sbjct 5176 CACCTCTCTTCAAGGCATCTCTAGCTTCT 5148 >seq8490 Length=318 Score = 123 bits (136), Expect = 2e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 96127 ATAGCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCA 96186 |||| ||| || ||||| | | ||| || ||||| ||||| ||||| ||||||||| Sbjct 69 ATAGATTTTAAACCTTCATTAACAATCGCTTGTGCTAAAACTGTTGCTGTAGTTGTTCCA 128 Query 96187 TCTCCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTT 96246 || || |||| ||| | || ||| |||| ||| | |||||| || || | |||| Sbjct 129 TCGCCGGCTTCATCATTGGCTTTAGAAGCAACTTCTTTCACCATTTGTGCGCCCATGTTT 188 Query 96247 TCAAATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATT 96306 |||||| ||||||||| | ||||||| |||| ||||| || ||||||||||| || || Sbjct 189 TCAAATTTATCTTCTAATTCAATTTCTTTAGCAACACTAACGCCATCTTTAGTGATTGTT 248 Query 96307 GGA 96309 ||| Sbjct 249 GGA 251 >seq59433 Length=8951 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 96130 GCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCT 96189 ||||| || ||||||| | || || |||| || || || || ||||||||||| Sbjct 2821 GCTTTCAAACCTTCTTTCACCATAGCTTGCGCTAGAACGGTCGCGGTAGTTGTTCCATCA 2762 Query 96190 CCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCA 96249 || || | ||||| || ||| |||| ||| | | ||||| || | |||||| Sbjct 2761 CCGGCTACGTCGTTAGTTTTTGAAGCCACTTCTTTCACAAGCTGAGCGCCCATGTTTTCG 2702 Query 96250 AATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGA 96309 ||| |||||||| | ||||||| | || ||| ||||||||||| |||| | ||||| Sbjct 2701 AATTTGTCTTCTAACTCAATTTCTTTTGCAACAGACACACCATCTTTTGTAACGGTTGGA 2642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320785493824288