Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq84132 150 5e-32 seq90072 109 1e-19 >seq84132 Length=808 Score = 150 bits (166), Expect = 5e-32 Identities = 535/821 (65%), Gaps = 39/821 (5%) Strand=Plus/Minus Query 39551 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 39610 ||| || || | || |||||||| | || |||||||||| ||||| ||||||||||| Sbjct 808 AACGACAGCCAAATAGGCCCAGCGTCTCCCGCTCCAGATATAAGTCACGTCACCGCACCA 749 Query 39611 CACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATG 39670 || | ||| ||||| || ||| |||||| | || || |||||| | || ||||| Sbjct 748 TACTTTATTCGGCTCCGTTACGTTGAACTGACGATCTAGTGTGTTAGGCACCGCCACATG 689 Query 39671 TTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 39730 || || | | || || ||| ||| |||| ||||| || || | | | Sbjct 688 CTCCTGTCTTGCCTTCTTGTATTTGTGGCCAGGCAGCTGGCAGCTCACTAGTTCTAAGTA 629 Query 39731 TTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG-GTAGCCTCTCCGGGTTGCCATTG 39789 |||||| || | | ||| | || | || || ||| ||||| ||| | || Sbjct 628 TTTCATTAGACGACTAGCCCTATAACGACTCAGCTTAGTA-CCTCTGGCTGTTACGATCT 570 Query 39790 TGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTCAAGTACCTGAC 39849 || | | |||| ||||| || || |||| ||| | || |||| | |||||| Sbjct 569 CAGCAAGGGTTCTCGCTCCCGCTGAGCCGTTGCTCTCGTCAAA-AGCT----TCCCTGAC 515 Query 39850 TGCGTAATACAGCCCGTC-TGCC-----GTCTGGTTTTT-CAGGACGGTTTTTCCAGTAT 39902 | | || ||| || | ||| | | ||||| || ||| ||| ||| || Sbjct 514 TTGGCTATGCAGTTCGACCTGCTTAGGAGAAAGCTTTTTGCA--ACGCTTTGACCAATAC 457 Query 39903 CTGTAGCTGCTGCGATGAACCCCGAACACATGGCAG---AGTGTGACCATAGGATAATGC 39959 | ||||||||||||| || | || || | |||| || | ||| | || | Sbjct 456 TTATAGCTGCTGCGATTCACTTCAAAGACTTTGCAGGCTAGCGATACC---GAATGGCTC 400 Query 39960 GCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAG 40019 || ||| | | | | || || |||| ||| ||||| ||||||||||| ||||||| Sbjct 399 TCTTTGACTCTGTCAACTAACGCGAACCTCTCATCGAGTCGGACATCAAGAGAGCGGTAG 340 Query 40020 CCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCT--TTTTCCTGAGCTCACG 40077 ||||||||||||| || ||||| ||| | | |||| |||| |||||||| Sbjct 339 CCTTTTTTAATATCTCTTTCTCTTCTTCGACCCTCCTGAGCTGCCTTTC--AAGCTCACG 282 Query 40078 GATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATC 40137 || ||| |||||||| || || | | ||| || | | || | ||||| | Sbjct 281 TATCCGTTGTTGGTCCGGGGTCATCGGTGTGCCTTGAGGGGCTACACCTTCTCGCTCCGC 222 Query 40138 ACGCAGTTGTTTGACCCATCTTGT-CATTGTGGAAAGGCCAACATCCATAGCTTTGGCGG 40196 || || || ||||| ||||| |||||| || ||||| ||||||| | ||| | Sbjct 221 TCGAAGCTGGCGCACCCA-CTTGTCCATTGTTGATTTACCAACCCCCATAGCGTCGGCTG 163 Query 40197 CATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTG 40256 | ||| | | | ||| ||||| |||| ||| || | ||| || | || |||| Sbjct 162 CTTCTCGAATTGAGCGACCCTGATCAACTACCAATTGGGCTGCTTCAAGTCTGAATTCTG 103 Query 40257 CGCTAAA---------ATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAG 40306 |||||| ||||| | |||||| || ||||||||||||| | ||| ||| Sbjct 102 GGCTAAAGGTTGGTCTGGTTCTTCTCTTCATT-GATCACCTGTGTTGTTGTGGAGATGAT 44 Query 40307 CATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACT 40347 ||||||||||| ||||||||||||||||| | ||||||| Sbjct 43 CATATCACCTCCTATCAGGTGGCCAAATTCACTATGCCACT 3 >seq90072 Length=608 Score = 109 bits (120), Expect = 1e-19 Identities = 315/478 (66%), Gaps = 9/478 (2%) Strand=Plus/Plus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAG-AGTTTTTCCAGTATCGATT-TTCCG 39158 || ||||||||| |||||||||||| | |||| |||| |||| || | ||| |||| Sbjct 125 TGTAGTGGTCAAGTAAAACTGGCCACAG-TTTAGTAGTTAGTCCAATA-CAATTGCTCCG 182 Query 39159 ATTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCA 39218 | ||||| ||| |||| || | || ||| |||||| |||||||| || | Sbjct 183 CTGTATTTGGACTTAAACCACGATTGTGTTGGTGAGGTCTTGTCTGGCTGTAATAACCAA 242 Query 39219 CGATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCA 39278 | | ||| || || | || || || || ||| | |||||| | | |||| Sbjct 243 CTAGATAATCTGTCACCGCATGCTTCGCTTCAACGAAATTCCGGTAACCAAGTGCTGGCA 302 Query 39279 TCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTC 39338 |||||| | || | ||||||||| || | |||||| || || ||||| || |||| Sbjct 303 CCCATTCCGTTTTTAAACTCCTGAAAAATCTTTCCATAGGTGCATTGTCCCAACAATTTC 362 Query 39339 CGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGC--CCGGAACTGCC 39396 | || || ||||| || ||| || ||||| |||| ||| |||| ||| || || | Sbjct 363 CTCGGCGACTCATGCTTTGTTCAATTTGGTAACGCC---ATAGCTGCTGCCGAAATTGTC 419 Query 39397 TGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGG 39456 || || ||||||||||| || || ||| || | || | || || || | Sbjct 420 GACTGGTGTAATGACTGCCTTGGTCAGAGTGAAAGAGTACGCTTTTCGGTCGGCCGCGCG 479 Query 39457 TTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGG 39516 ||| | ||||| ||||| | ||| | | |||| || ||||| |||||||| | Sbjct 480 ATTCATAAGCCATGCTTAGCGCCTGACAGGTTAACGTGCTATCTGGCGATAACGACATCG 539 Query 39517 CCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 39574 ||||||| | || || | | || | || | ||| || || | || |||||||| Sbjct 540 CCCAGCCAATCGGCTTGCGGGAAAATAAATCTATAACGACAGCCAAATAGGCCCAGCG 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132426528605888