Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq86634 203 1e-47 seq11298 201 3e-47 seq59641 158 4e-34 >seq86634 Length=710 Score = 203 bits (224), Expect = 1e-47 Identities = 313/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 39906 TCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTAATGCGGTGT 39965 || |||||| | ||||| || ||||| ||||||||||| || ||||||||||| || ||| Sbjct 188 TCGGTAAAAAACAATTCAGCATAAGCGATTTGCCATAATAGGAAATTACTAATACGTTGT 247 Query 39966 TCGCCACTTGTTCTTATTACTAAATCTACATCAGGTAGATTATGCGTGTAAAGATGCTTA 40025 || ||||| || | ||||| ||| || || || |||| || | ||||||||||| ||| Sbjct 248 TCACCACTGGTGCGTATTAATAAGTCCACGTCTGGTAAATCGCGGGTGTAAAGATGATTA 307 Query 40026 TTTAATATTGAATCGTCAATAGAATCTATTGAAATTATATTATTTTTAACTTTATCACTA 40085 |||| ||| || || || | ||||||| |||||||||||||| | ||| Sbjct 308 TTTATAGTTGCTTCATCTATTTCAGACGGCGAAATTAGGTTATTTTTAACTTTGTGGCTA 367 Query 40086 ATTATTTTAACAGCATTTATGATTTCTTCTCTCGATCCGTAGCTTAATGCTAAGGTAAGG 40145 || || | | |||| ||||| |||| || ||||| || | ||| || || ||| Sbjct 368 ATCTCTTGGATGGTTTTTACAATTTCCTCTCGGGAACCGTAACTAAGTGCCAATGTGAGG 427 Query 40146 GTCATTCTGGTATTGTTTTTTGTTTGCGCTATTACTTCGAGCAATTCTTTTTGAACTGAT 40205 ||||| | | |||| ||||||| |||||| || |||||||| |||| | || | Sbjct 428 GTCATGCCTTTGTTGTCCTTTGTTTTTTTTATTACGTCCAGCAATTCATTTTTAGCTTTT 487 Query 40206 TTTGGTAAATTATCAAGGTTTCCTATCGAATTTAACTTTATGTTGTTTTTTACTAAGGTT 40265 ||||| | || | |||||| || | |||||| ||||| |||||| | | ||| Sbjct 488 TTTGGAAGTGCGTCTAAGTTTCCAATTGCATTTAAACGAATGTTATTTTTTTCGAGCGTT 547 Query 40266 GCTAAttttttttttAAGGAATTAATTAGTATTTTCATTAACAAATCGACTTCTAATTTT 40325 || || |||||||| || || || | |||| || || ||||| | ||| Sbjct 548 TTTATTTCCTTTTTTAATGATGAAACTAAAAGCCTCATCAAAGTTTCTACTTCCAGTTTG 607 Query 40326 GGACGGTTCCAATTTTCGGTCGAAAAA 40352 || | |||||| |||||||| || ||| Sbjct 608 GGTCTGTTCCAGTTTTCGGTAGAGAAA 634 >seq11298 Length=310 Score = 201 bits (222), Expect = 3e-47 Identities = 177/219 (81%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 35343 TGTGGTTGCTCACTTTCACTTAGTAATGG-TATTTCTGCATTGTACGGATTCTTTGCTGG 35401 ||| || |||||||||||||||||||||| |||||||||| | || || | ||||| || Sbjct 91 TGTAGTCGCTCACTTTCACTTAGTAATGGGTATTTCTGCACTATATGGTCTTTTTGCCGG 150 Query 35402 TGTTTACCACTGGTTTCCAAAAATGTTC---GGGCGTATGATGAATAAAAATTTAGGTTA 35458 || ||||||||||| |||||||||||| || || ||| ||||||| || ||||| || Sbjct 151 GGTGTACCACTGGTTCCCAAAAATGTTCCAAGGACGCATGTTGAATAAGAACTTAGGATA 210 Query 35459 TATTCACTTTTGGATTACTGCAATTTGTGCTTATGGTGTTTTCTATCCAATGCACTTTAT 35518 | |||| || ||| | |||| | | |||| |||||||| || | |||||||||||||| Sbjct 211 TGTTCATTTCTGGGTAACTGTAGTAGGTGCCTATGGTGTGTTTTTCCCAATGCACTTTAT 270 Query 35519 AGGGATGGCTGGATTACCACGTCGTTACTACACAAATAC 35557 ||| ||||| ||||| ||||| |||||||| ||||| || Sbjct 271 AGGAATGGCAGGATTGCCACGACGTTACTATACAAACAC 309 >seq59641 Length=7208 Score = 158 bits (174), Expect = 4e-34 Identities = 347/511 (68%), Gaps = 22/511 (4%) Strand=Plus/Plus Query 35344 GTGGTTGCTCACTTTCACTTAGTAATGG-TATTTCTGCATTGTACGGATTCTTTGCTGGT 35402 || ||||| ||||| ||| ||||||||| | | || || | | ||| | || || ||| Sbjct 5501 GTAGTTGCCCACTTCCACGTAGTAATGGGTCTGTCAGCTGTCTTTGGAATGTTCGCCGGT 5560 Query 35403 GTTTACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATATT 35462 |||||||| ||||| ||||||||||| || | |||||| | || || || | Sbjct 5561 GTTTACCATTGGTTCCCAAAAATGTTTGGAAAAACGATGAACACTCGATTGGGCTACGCT 5620 Query 35463 CACTTTTGGATTACTGCAATTTGTGCTTATGGTGTTTTCTATCCAATGCACTTTATAGGG 35522 ||||| ||| ||||| || ||||||| || || |||| ||||||||||| |||| Sbjct 5621 CACTTCTGGGTTACTATTGTTGGTGCTTACGGGGTATTCTTCCCAATGCACTTCGTAGGA 5680 Query 35523 ATGGCTGGATTACCACGTCGTTACTACACAAATACTAACTTT-CCATTATTT-GAT---G 35577 || |||||| |||| | ||||| | || | ||| | ||| | || |||| ||| | Sbjct 5681 ATCGCTGGAGCACCAAGACGTTATT--ACGATTACACAGTTTACAATGATTTCGATGCAG 5738 Query 35578 ATTTAGCTGATGTGA--AT-------AAAGTAATTACTAC---TTTTGCTTTGATTGGAG 35625 | || |||| ||| || || ||||||| ||| ||||| | ||| | Sbjct 5739 CTGCAGGTGATATGATGATGGATCTGAACGTAATTATTACAATGTTTGCGATCCTTGCGG 5798 Query 35626 CAGCTTTCCAATTGGTATTTATGTGGAATTTCTT-TACTAGTATTTTTTACGGaaaaaaa 35684 | | | || ||| |||| | | || ||||| ||| |||||| ||| ||| Sbjct 5799 CTGTTGGACAGTTGTTATTCTTATTCAACTTCTTCTAC-AGTATTGCAAGAGGAGCGAAA 5857 Query 35685 GCTGTGCAAAATCCATGGAGGTCTAATACTCTTGAGTGGACTACACCAGTGGAACATGTA 35744 || || || |||||||||| | || | || |||||||| || || |||||| | Sbjct 5858 GCGGTTCAGAATCCATGGAAAGGAACAACGTTGGAATGGACTACTCCGGTAGAACATATT 5917 Query 35745 CATGGAAACTGGCCAGGTGCTATCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAA 35804 || |||||||||||||| | | || ||| | ||||||||||||||||| ||| Sbjct 5918 CACGGAAACTGGCCAGGAGAATTACCTACTGTTCACAGATGGCCTTATGATTATTCTAAG 5977 Query 35805 CCAGGGCATGACGAAGATTTTGTTCCTCAAA 35835 ||||| | || | ||||| ||||| |||| Sbjct 5978 CCAGGATACGATGTTGATTTCGTTCCGCAAA 6008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150013303394560