Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq70280 100 4e-16 seq60879 89.7 6e-13 seq61441 84.2 3e-11 seq61577 82.4 1e-10 >seq70280 Length=1721 Score = 100 bits (110), Expect = 4e-16 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 172458 GTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAA 172517 |||||| | ||| ||| ||| || || | |||||| | ||| || ||||| ||| Sbjct 705 GTTAAAATCTGGGATGGTAACGGCTCAAGAGAATTTCTTGATAACAATGGATTTACAGAA 646 Query 172518 AGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 172577 ||| ||||||||||| | || ||| | ||||| || ||||||||||| || ||| || Sbjct 645 AGAGAAGAAGGTGATCTTGGACCAGTATATGGTTTCCAATGGAGACACTTTGGAGCTGAA 586 Query 172578 TATATCGACTGTG-ATACAGATTACACAGGACAAGGAGTGGA-CCAATTAAGTCAAACTA 172635 |||| |||| || || || || |||||||||||| || | ||||||| | | || Sbjct 585 TATA-AGACTATGCATGATGACTATGAAGGACAAGGAGTCGATCAAATTAAG-AATATTA 528 Query 172636 TT-AATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTA 172694 || || || | | || | || ||| ||| |||| || | || || |||||||| Sbjct 527 TTAAAGACCTCA-AAGAGAATCCAACCAGTCGAAGAATTATTCTTAATGCATGGAATGTT 469 Query 172695 CCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATA 172731 || | | | || |||| ||| || |||||||||| Sbjct 468 GCTGACTTAAAGAAGATGGCTCTACCACCTTGCCATA 432 >seq60879 Length=4195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 ||||| || ||||||||| || ||||| ||||| || ||| |||| | ||||| || Sbjct 2213 ATTAAAGTAGCTCAATTATCAGGATATGTAGCAGAGAAATCAGCTTATCATCATGGAGAG 2272 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT- 166068 ||| |||| | ||||| || | || ||| |||||||| | |||||||| Sbjct 2273 CAATCTTTAGCTAGTACTATTGTTGGAATGGCACAAAGCTTTGTTGGAAGCAATAATATT 2332 Query 166069 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 166128 || || | || ||| | || || || ||| | |||| | || || |||||| |||| Sbjct 2333 AGTGTTT-TAGACCCTAAAGGGCAGTTCGGTTCGAGATCAATGGGTGGAAAAGATGCTGC 2391 Query 166129 TGCATCAAGATATATTTATACCAAAC 166154 | || |||| ||||||||||||| || Sbjct 2392 TTCAGCAAGGTATATTTATACCAGAC 2417 >seq61441 Length=3753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 194566 ACTGGTaaaaaaaTTGAAAATAAA-ATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 194624 ||||| ||||| |||| | | || || ||| | || |||||||| ||||| | | || Sbjct 3195 ACTGG-AAAAAGATTGGATACAATGATCTTTTTGGGACCAACTTACTACCAGAGATTAAA 3253 Query 194625 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATC 194683 || ||||| | |||||||| ||||| ||| || ||| | | | | | ||||| Sbjct 3254 GCATATGGTCGATGATAAAATTCATGCCAGATCTCGTGGTCCACTCCAGATTCTTACAA- 3312 Query 194684 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 194743 ||||||||| | ||| | ||| | |||||| | ||||||||||||||||||| | Sbjct 3313 GACAACCAACTGAAGGTAGATCTAGACATGGAGGACTCAGATTTGGAGAAATGGAAAGGG 3372 Query 194744 ACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAGAATGT-TTTTGTATTCT 194802 | ||||| | ||||| || || |||| | || |||||| | | | ||| |||| Sbjct 3373 ATTGTATGGTCTCTCATGGAGCAGCTAGATTCCTCAAGGAAAGACTTTATGATGT-TTCT 3431 Query 194803 GATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGAT 194843 ||| | ||| |||| |||| | |||||| |||| Sbjct 3432 GATTGCTACAGTGTCCATGTATGCAGAATATGTGGGTTGAT 3472 >seq61577 Length=3671 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194607 TTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCA 194666 |||||| || | ||||| || |||||| | ||||| |||||||| || | || | Sbjct 3230 TTATTATCAAAGACTTAAGCATATGGTTCAAGATAAGATGCATGCAAGGGCTAGAGGACC 3289 Query 194667 AGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATT 194726 | | ||| | ||| | ||||||| | | ||| | ||| ||||||||| |||||| Sbjct 3290 AATGACTTCATTAACTAGACAACCTACTGAAGGTAGATCTAGAGGTGGAGGACAAAGATT 3349 Query 194727 TGGAGAAATGGAAAAAGACTGTATT 194751 ||||||||||||| ||||||| || Sbjct 3350 AGGAGAAATGGAAAGAGACTGTCTT 3374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631626631189760