Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq108602 107 2e-18 seq19544 102 7e-17 seq59922 93.3 4e-14 seq44811 93.3 4e-14 seq97248 91.5 1e-13 seq87644 87.8 2e-12 seq56753 87.8 2e-12 >seq108602 Length=371 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || ||||| || || | || || ||| | Sbjct 347 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCT 288 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||| ||||| || || || ||| Sbjct 287 GACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAA 228 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || ||||| | || || |||| | |||||||||||| Sbjct 227 CAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAAC 168 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || || ||||| Sbjct 167 ATTCAAAAAGAATCTACTCTCCATTTGGT 139 >seq19544 Length=280 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || || || ||| || Sbjct 276 ATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCC 217 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || |||||| Sbjct 216 GATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAA 157 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || || | || ||| |||| | | || ||||| || Sbjct 156 CAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAAT 97 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || ||||| Sbjct 96 ATCCAGAAGGAGTCCACTCTTCATTTGGT 68 >seq59922 Length=6033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || || |||||||| || ||||| | |||| |||||||| || ||||||||||| Sbjct 3513 TTTGTCAACTGTAAACTTAATTGCATCCGTTGCTGCTTTCGTTCGCAAGTAATACATTCC 3454 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 |||||| || || |||||||| |||| | ||| || || || ||| | || | | | Sbjct 3453 CGTTTTCAATCCTTTTTCCCATCCGTAGAAGTGCATAGACGTCAGTTTCCCGAAGTTTGC 3394 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATC 138326 || ||| || || || || |||||| ||| ||| |||| |||| ||| Sbjct 3393 ATTTTCCATGAAAATATTCAATGATTGAGATTGACAAATGTAAGCCCCTCTATC 3340 >seq44811 Length=222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 24775 AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGAT 24834 |||| ||| || || ||| || |||||||||||||| || || ||||||||| | | || Sbjct 201 AACGTTAAGACTAA-GATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTAT 143 Query 24835 CTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGA 24894 |||||| || || || |||| || |||| | || || || |||||||| ||||| Sbjct 142 CTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGA 83 Query 24895 ATCGACACTACACTTGGT 24912 ||| || || |||||||| Sbjct 82 ATCTACTCTCCACTTGGT 65 >seq97248 Length=461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || |||| ||||| || ||||| | || || || || | | Sbjct 183 ATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGA-GCAATC 241 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || |||| || || || ||| |||||||||||||| || || || |||| Sbjct 242 AGATACTATTGACAACGTCAAGACTAA-GATTCAAGACAAAGAAGGCATCCCACCAGATC 300 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| | |||||||| || || || || | || ||| |||| | || ||||| | Sbjct 301 AACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACA 360 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||| || || || || || || ||||| Sbjct 361 ACATTCAGAAAGAGTCCACTCTTCATTTGGT 391 >seq87644 Length=678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || ||||| ||||||||||| ||||| ||||||||| | || ||||||||||| || Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || | || ||| |||| | | || || || || ||||| || ||||| || || || Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 | || | |||| | || ||||||| Sbjct 354 CTCGTCCTCAGATTAAGAGGTGGCGGAA 381 >seq56753 Length=203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||||||||| | || |||| || | ||||||| || ||| Sbjct 31 AAGATCCAAGACAAAGAAGGAATTTCACCAAATCATCAGAAACTCCTCTTTGCTGGAAAA 90 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| |||| | | || |||||||||||||| |||||||| || || || Sbjct 91 CAATTGGAAGATGGAAGAATCTTATCTGATTATAACATTCAGAAGGAATCTACTCTTCAT 150 Query 24908 TTG 24910 ||| Sbjct 151 TTG 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449283759714560