Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq97248 95.1 1e-14 seq44811 86.0 5e-12 seq108602 82.4 6e-11 >seq97248 Length=461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || || |||||||| || || || |||||| | || |||| Sbjct 180 AATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAA 239 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | | || || |||||| |||||||||||| | || ||| Sbjct 240 TCAGATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGAT 299 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||| | || | || || || || | || |||| |||||| | | |||||| Sbjct 300 CAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTAC 359 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| ||||| || || | || |||| | ||||| |||| |||| Sbjct 360 AACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGAA 411 >seq44811 Length=222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||||||||| | || ||||||||||||||||| | ||| || || Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCAC 110476 || |||| || | ||||| | | || ||||||||||| || |||||||| | ||| Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCAC 70 Query 110477 ATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| | ||||| |||| |||| Sbjct 69 TTGGTCCTCAGACTTAGAGGAGGAA 45 >seq108602 Length=371 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 |||||| || ||||| || ||| | || || |||||||| ||| | || || | | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || || |||||| || ||||| || | || || Sbjct 288 TGAC---ACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGA 232 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||| |||||||| | ||| || ||||| | || || | ||||| | | ||||| Sbjct 231 CCAACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTA 172 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||||||||||||||||| | || |||| | ||||| |||| ||| Sbjct 171 TAACATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412292400947936