Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq38273 170 3e-37 seq351 170 3e-37 seq40947 98.7 2e-15 seq104760 89.7 8e-13 seq64228 89.7 8e-13 seq59211 84.2 4e-11 >seq38273 Length=231 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| ||||| || |||||||||||||| || ||||||| ||||||| || Sbjct 28 CTGGCCCTGATATTTTCCACCGCGATCCTTGTAGCTGACTTCGCAGACCTCGTCGGATTC 87 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 || ||||||||||| || || |||||||| || || | ||||||||| | || || Sbjct 88 AAAGAACAGCATCTGGGCGACGCCTTCGTTGGCATAGATTTTTGCCGGCAGGGTTGTGGT 147 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| || ||||| || |||||||| |||||||| || ||||||||||| || || || Sbjct 148 GTTGGAAAATTCCAGTGTGACATGACCCTCCCACTCGGGCTCCAGCGGCGTGACATTCAC 207 Query 35645 GATGATACCACAGCGCGCGTAGGT 35668 ||| || || |||||||| ||||| Sbjct 208 GATAATGCCGCAGCGCGCATAGGT 231 >seq351 Length=365 Score = 170 bits (188), Expect = 3e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 35457 ACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCG 35516 || || |||||||||||||| ||||| || || || || || | ||| || |||| Sbjct 1 ACGCCAGTCTGGCCCTGGTACTTACCACCACGGTCAGCATAGGATACTTCACACACCTCA 60 Query 35517 TCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGG 35576 || || || |||| |||||| ||||| |||||||| ||||| | ||| || ||| Sbjct 61 TCGGATTCAAAGAACAACATCTGAGCCACGCCTTCGTTAGCGTAAATCTTCGCAGGGAGG 120 Query 35577 TTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTC 35636 | || |||||| ||| || | |||||||||||||||||| ||||| |||| |||||| Sbjct 121 CTAGTGGTGTTGGAGAATTCTAAAGTCACATGACCTTCCCATTCAGGCTCCAACGGCGTG 180 Query 35637 ACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACG 35696 || || || || || ||||| || || || || |||||||| || ||| || || Sbjct 181 ACATTTACAATAATGCCACAACGAGCATAAGTAGATTTACCCAAGCAAACCGTTAGCACA 240 Query 35697 TTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCA 35733 || || |||||||||||||| || | ||||| |||| Sbjct 241 TTACGTGGAATGCGGAAGTACTCAATAGTGCGAGCCA 277 >seq40947 Length=228 Score = 98.7 bits (108), Expect = 2e-15 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 162 GCCGGTATAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCCCGGGTTCGAAT 221 Query 120288 CCTGATG 120294 |||| || Sbjct 222 CCTGGTG 228 >seq104760 Length=399 Score = 89.7 bits (98), Expect = 8e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 35466 TGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCAC--TC- 35522 || || |||||||| || || ||||| || || ||||||| | || ||| || Sbjct 221 TGACCTTGGTATTTTCCACCACGATCTTTATAGCTTGTTTCGCAAACGTCATCAGCGTCC 162 Query 35523 ---TCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTG 35579 || ||||| | | |||||| |||||| || || || | || || || Sbjct 161 GCTTCAAAAAATAATACCTGCGCACAACCTTCATTAGCATAAATCTTAGCGGGTAGCGGT 102 Query 35580 GTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACG 35639 || || || |||||||| || || |||| |||||||||||||||||| | ||||| ||| Sbjct 101 GTGGTATTACTGAACTCTAGTGTGACATAACCTTCCCACTCAGGTTCAAATGGCGTGACG 42 Query 35640 TTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAA 35680 || || ||||| || || ||||| || || ||| ||||| Sbjct 41 TTCACAATGATGCCGCAACGCGCATAAGTTGACTTGCCCAA 1 >seq64228 Length=2675 Score = 89.7 bits (98), Expect = 8e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 122773 TTAGCTCAGTTGGTTAGAGCATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCC 122829 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1479 TTAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCAAGGTTCGAGTCC 1423 >seq59211 Length=14513 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA 120285 ||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct 10864 TTGCCCCTATAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCCGCGGTTCGA 10923 Query 120286 -TCCCTGATGCCGGCACCAT 120304 ||| || || |||||||| Sbjct 10924 GTCCGTG-TGGGGGCACCAT 10942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824789919118080