Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq19544 109 4e-19 seq97248 100 2e-16 seq108602 86.0 4e-12 >seq19544 Length=280 Score = 109 bits (120), Expect = 4e-19 Identities = 170/236 (72%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | || || |||| |||| ||| ||||||||| || || || || | Sbjct 48 TTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAG 107 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | | | |||| || | ||||||||| || ||||||| || ||| || ||| | | Sbjct 108 ATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTG 167 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGATGCTATCGAT----TC--ATTG 34921 | | || ||||| || || | | || || || || || |||| || || |||| Sbjct 168 GGATACCTTCCTTATC-TTGAATCTTAGTCTTTAC--AT--TATCAATAGTATCGGATTG 222 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||| ||| ||||||||||| || | ||||||||||||||||||||| Sbjct 223 T--TCGACGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq97248 Length=461 Score = 100 bits (110), Expect = 2e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | || ||||||| |||| ||| ||| ||||||||||| || || | Sbjct 411 TTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAG 352 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | | |||| || | ||||||||| |||||||||| || || || ||| | | Sbjct 351 ATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTG 292 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGATGCTATCG-AT-TCATTGGCCT 34925 | | || || ||||| || | | || || |||||| | || | || | |||| || Sbjct 291 GGATGCCTTCTTTGTC-TTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTG--CT 235 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| | ||| || ||||| || || | |||||||| ||||| ||||| Sbjct 234 CAACATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq108602 Length=371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/235 (70%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| || | || ||||||| || | || || || ||||||||||| || || Sbjct 120 TCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGA 179 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| | | | || || | ||| ||||| || ||||| |||| || |||||| | || Sbjct 180 TAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGG 239 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGATGCTATCGAT----TCA--TTGG 34922 | ||||| || || || | | || || ||||| || | ||||| ||| ||| Sbjct 240 AATTCCCTCTTTATC-TTGAATCTTAGTCTTGAC--AT--TGTCGATGGTGTCAGATTGT 294 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | ||| ||||| ||||| || || ||||| |||||||||||||| Sbjct 295 --TCAACATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325259534125088