Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq71628 120 8e-23 seq90772 113 1e-20 seq24109 109 1e-19 >seq71628 Length=1604 Score = 120 bits (132), Expect = 8e-23 Identities = 283/423 (67%), Gaps = 6/423 (1%) Strand=Plus/Plus Query 18659 TGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCT 18718 |||||||| || | |||||||||| ||||||||| ||||| || || |||||| Sbjct 167 TGCCGACGTTTGCGATTATAAAACACTTCGATGTATTCAAATATCTCTGATTTAGCTTCC 226 Query 18719 TCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACT- 18777 || | | | |||| |||||| || || | || |||| |||| ||| | Sbjct 227 TCCCTTGATACGTAAATCTTTCGTTTGATGTGCTCCTTCTTCA--AGCTACTAAAGAAGG 284 Query 18778 -TTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGT 18836 |||||| ||||| || |||| ||| || || || || ||||| || ||| | | | Sbjct 285 ATTCTGCTACTGCATTATCATAACAATTGCCACGGCGACTCATGCTTGGCTCTAAACGAT 344 Query 18837 GTGATTT-CAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGA 18895 ||| || | | | | |||| || | |||||||||||||| ||||| Sbjct 345 TATCTTTGCACCATCTCATAAAA-TCATCACTGCCAAATTGACTGCCTTGATCGGAATGG 403 Query 18896 ACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACA 18955 | | ||| ||| || || ||||||| ||| || |||||| | |||| | || Sbjct 404 ATAATCACTGGCTGTTTCGGTTTACGTCTCCATACCGCCATCGTTAAGGCATCTAATACG 463 Query 18956 ATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCA 19015 || || ||| |||| |||| |||||||||||||| ||| | ||| | || ||| Sbjct 464 ATTTCTGTTGCCATCGTAGGCTTCATTGACCAGCCAACCACTGACCTTGAGTAAAGATCA 523 Query 19016 ACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACC 19075 | ||||| || ||||| | |||||||| | || ||||| ||||| || ||||| ||| Sbjct 524 ATCACCACTGCAAGATATAACCAGCCTTGATAGGTGCGGATATAGGTAATATCCGTCACC 583 Query 19076 CAA 19078 ||| Sbjct 584 CAA 586 >seq90772 Length=596 Score = 113 bits (124), Expect = 1e-20 Identities = 187/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 18745 TATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTT 18804 ||| || || ||||| |||||||| ||||| || || || ||||| || || || || Sbjct 322 TATTCGCTCTCGTTTAAGTAGCTGAAAAAAGCTCTCAGCAACTGCATTATCCCAGCAATT 381 Query 18805 ACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATA 18864 ||||| || |||||||| | ||| || | |||| || | |||||| || | Sbjct 382 TCCGCGGCGACTCATACTCGGCACCAAGTTATGCGCCTTCAAAAATGCCTGCCAATCGTG 441 Query 18865 GCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCG 18924 ||| | | || |||||||||||||| || |||| ||| | | || || ||||| || Sbjct 442 GCTGCTAAATTGGCTGCCTTGATCAGAGTGCACCATCACTGGATGCTGTGGTTTACGACG 501 Query 18925 CCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGA 18984 ||| || |||||||| | ||||| || || | || || ||| || | ||| || Sbjct 502 CCAAACTGCCATCAGCAAGGCATTAAGCACTAACTCTGTTTCCATGCGAGCGCCCATCGA 561 Query 18985 CCAGCCAATAACTTTGCGCGAGAACAGGTC 19014 |||||||| ||||| || || || || || Sbjct 562 CCAGCCAACAACTTGCCGTGAAAATAGATC 591 >seq24109 Length=266 Score = 109 bits (120), Expect = 1e-19 Identities = 177/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 ||| || |||| || || |||||||||||||| | ||||| |||| ||| Sbjct 255 GTTGTAGAACAACTCTATATAATCAAAAATATCCTGTCTTGCTTCGCCTCGATGATTGTA 196 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 || ||| || |||| ||| ||||| | || || || || ||||| || |||||||| Sbjct 195 TATTTTTCGTTTAATCCTTTCCCGTTTTAAAAGTTGAAAGAAGCTTTCAGCCACTGCGTT 136 Query 18793 GTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGA 18852 || |||||||| || || || ||||| ||| || || ||| | || | ||| Sbjct 135 ATCGTGACAGTTCCCACGGCGACTCATGCTGGATTCTAGGTTGTGCGCCTTTAAGAATAT 76 Query 18853 CTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTG 18912 | ||| || | || ||||| ||||| ||||| |||||||||| |||||||| ||| Sbjct 75 ATCCCAATCTTCACTGGTGTATTGACTACCTTGGTCAGAATGAATCAGCACCTTACTTTT 16 Query 18913 AGGATTACGTCGCCA 18927 ||| || | ||||| Sbjct 15 AGGTTTCCTGCGCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126939250337280