Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq83019 158 6e-34 seq71741 109 3e-19 >seq83019 Length=855 Score = 158 bits (174), Expect = 6e-34 Identities = 314/459 (68%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 66394 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGA- 66452 ||| ||||||| ||||| ||| || |||||| |||||||| ||||||||||| ||||| Sbjct 728 GTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGCGACATGGGGGAT 669 Query 66453 -CAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCA 66511 || | || |||||||| || ||||| ||| ||||| |||||||||| ||||| Sbjct 668 TCACTGCCG--GGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGTT 611 Query 66512 CCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66568 | || |||| ||| | || | ||| ||| |||||||| | ||| |||||||| Sbjct 610 CGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCG 554 Query 66569 GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACG 66628 || | || | |||| ||| || || |||||||| || || ||| ||||| Sbjct 553 GCGTCATG---TTCGGCAACCCTGAAACAACAACGGGCGGCAATGCGCTGAAATTCTATT 497 Query 66629 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 66688 | || || || | || | || ||||||| | | ||||| | || || | || | Sbjct 496 CGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTGACGAAGTGGTGG 437 Query 66689 GCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCG 66748 | |||| ||||| || || || || ||||||||| | || ||||| |||| | | | Sbjct 436 GTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCATTCCGCCAGGTTG 377 Query 66749 AGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCG 66808 ||||| || |||| || ||||| || || | | || | |||||||| | | Sbjct 376 AGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGCTCGACCTTG--G 319 Query 66809 TGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 66845 |||| | | ||| | || | ||||||||| ||||||| Sbjct 318 TGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 >seq71741 Length=1598 Score = 109 bits (120), Expect = 3e-19 Identities = 277/416 (67%), Gaps = 9/416 (2%) Strand=Plus/Plus Query 66322 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66381 ||||| |||| ||| || ||||| || ||||||| ||| || || ||||| | | Sbjct 838 CAGCCAGACAATGGTGAACAGGCGCTTGAGATCGCTGATACGCTTGTACGCTCTGGTGCG 897 Query 66382 CTGTC-CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 66440 ||| ||| | ||| ||||||| || || || || ||| || |||||| | ||||| Sbjct 898 -TGTGACATTCTTGTCATTGACTCGGTTGCTGCTCTAACGCCTCGTGCCGAGATTGAAGG 956 Query 66441 CGACATCGGGGACAGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66498 || || || || ||| | || || || ||||| | ||| || || ||||| Sbjct 957 TGAAATGGGCGAT--TCATTGCCTGGTCTTCAGGCGCGTTTGATGAGCCAAGCTTTGCGC 1014 Query 66499 AAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 66558 || | || || | || || | ||||||| || | | ||||||| | || Sbjct 1015 AAATTGACTGGTTCAATTTCACGTTCCAACACAATGGTTATTTTCATCAACCAAATCCGT 1074 Query 66559 GAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTG 66618 ||| ||||| ||| | |||| | || || || || ||||| || |||||| Sbjct 1075 ATGAAAATCGGT---GTGATGTTCGGCTCTCCCGAAACAACAACCGGCGGTAACGCTTTG 1131 Query 66619 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 66678 | |||||| || || |||||| ||||| | || || || | | | | || || | || Sbjct 1132 AAGTTCTATGCGTCTGTCCGCTTGGATATTCGCCGTATTGGCGCAGTCAAAGACCGAGAC 1191 Query 66679 GAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 66734 |||| ||| ||||||| || || || ||||||||||| ||||| || || ||||| Sbjct 1192 GAGGTTGTTGGCAACCAGACACGCGTCAAAGTCGTCAAAAACAAACTTGCGCCGCC 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242413090726560