Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq83019 167 1e-36 >seq83019 Length=855 Score = 167 bits (184), Expect = 1e-36 Identities = 316/459 (69%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 66650 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 66709 ||| ||||||| ||||| ||| || |||||| |||||||| ||||||||||| ||||| Sbjct 728 GTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGCGACATGGGGGAT 669 Query 66710 AGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCA 66767 |||| | |||||||| || ||||| ||| ||||| |||||||||| ||||| Sbjct 668 --TCACTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGTT 611 Query 66768 CCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66824 | || |||| ||| | || | ||| ||| |||||||| | ||| |||||||| Sbjct 610 CGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCG 554 Query 66825 GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACG 66884 || | || | | ||| ||| || || ||||||||||| || ||| ||||| Sbjct 553 GCGTCATGTTCGGCAACCC---TGAAACAACAACGGGCGGCAATGCGCTGAAATTCTATT 497 Query 66885 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 66944 | || || || | || | || ||||||| | | ||||| | || || | || | Sbjct 496 CGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTGACGAAGTGGTGG 437 Query 66945 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCG 67004 | |||| ||||| || ||||| || ||||||||| | || ||||| |||| | | | Sbjct 436 GTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCATTCCGCCAGGTTG 377 Query 67005 AGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCG 67064 ||||| || |||| || ||||| || || | | || | |||||||| | | Sbjct 376 AGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGCTCGACCTTG--G 319 Query 67065 TGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 67101 |||| | | ||| | || | ||||||||| ||||||| Sbjct 318 TGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243784064504448