Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq59991 143 7e-30 seq62696 102 2e-17 seq87561 96.9 1e-15 seq88652 91.5 4e-14 seq65192 87.8 5e-13 seq24360 86.0 2e-12 >seq59991 Length=5771 Score = 143 bits (158), Expect = 7e-30 Identities = 217/306 (71%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 37142 AAGAAAATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCG 37201 ||||| |||||||||| | | | || | ||||| || |||||||| |||| || || | Sbjct 5663 AAGAACATCACTTCGGTGAAGATGTATTTGTTACTCGTAAAGGTGCGATTCGTGCTCGAG 5604 Query 37202 AGGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCA 37261 | || || ||||| || || || ||| ||||| || ||||||||||||||||| || | Sbjct 5603 AAGGTGAGCTGGGAATTATTCCAGGCAGCATGGGGGCAAAGTCATTCATCGTTCGTGGTA 5544 Query 37262 AGGGAAATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGG 37321 | || || ||||||||| ||||| ||| ||||| || || || | ||||||||| Sbjct 5543 AAGGCAACGGCGAATCGTTTTGCTCATGCTCACACGGCGCTGGCAGAGTAATGAGCCGGA 5484 Query 37322 CCGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGC-CACCAAAGGTATCGAG 37380 | |||| |||||| ||| || | || ||| | |||| | ||| | || | || Sbjct 5483 GCAAAGCCAAACGCTTGTTTACCGAAGACGAT-TTAAGGCAACAAACCGACGGCGTTGAA 5425 Query 37381 TGCCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCG 37440 || || | ||| |||| |||| || | ||||||||||| || ||||| ||| Sbjct 5424 TGTCGTATTGATAAGTCAGTGGTCGATGAAATTCCAGCGGCTTATAAAGACATTGATAAA 5365 Query 37441 GTCATG 37446 |||||| Sbjct 5364 GTCATG 5359 >seq62696 Length=3134 Score = 102 bits (112), Expect = 2e-17 Identities = 231/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 37171 GTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTGGCTCG 37230 || ||| | || || || || || ||| | || ||||| |||| || ||||| ||| Sbjct 10 GTAACCAGGAAGGGAGCCGTGCGAGCCAGGGAAGGCGAGATGGGAATTATCCCAGGCAGC 69 Query 37231 ATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCTTGC 37290 ||||| || | ||||||||||||||||| ||| || ||| || ||| ||| Sbjct 70 ATGGGCGCTAGATCATTCATCGTTCGCGGTTTGGGTAACGAAGAAAGCTTTTGCAGCTGC 129 Query 37291 AGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAG-CAAAACGCCGGTTCACAGTCGA 37349 ||||||||||| || ||| | ||| || ||| || ||| | ||||| | | || Sbjct 130 AGCCACGGTGCGGGACGAGTTATGTCACGTACCGCAGCCAAGAAAGCGGTT-TCCTTAGA 188 Query 37350 GGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACGA 37409 || ||| ||| || ||||| | ||||| || ||| | | ||||| ||||| Sbjct 189 CGAGCATAAGGAAGCTGTTAAAGGCGTTGAGTGTCGAGTAGACGAGGGTGTGATTGACGA 248 Query 37410 GACGCC-AGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGGTGG 37468 || || ||| |||||||| |||||||| || |||||||| ||| | |||| | Sbjct 249 AACACCGAGC-GCTTACAAAGACATCGACAAAGTGATGGCCGCACAAAATGATTTGGTTG 307 Query 37469 ACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTT 37510 | |||||| | || | || |||||||||| || |||| Sbjct 308 AGATCGTGTATACCTTAAAGCAGATCGTTTGCGTAAAAGGTT 349 >seq87561 Length=681 Score = 96.9 bits (106), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 21056 GAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGC 21115 ||||| ||||| |||||| | ||||||||| | |||| ||||||||| |||| ||||| Sbjct 457 GAAGT--TGGCGCCCCCGAGACGATTCGAACGTCCGACCCTTCGCTTAGGAGGCAAATGC 400 Query 21116 TCTATCCAGCTGAGCTACGGGG 21137 |||||||||||||||||||||| Sbjct 399 TCTATCCAGCTGAGCTACGGGG 378 >seq88652 Length=648 Score = 91.5 bits (100), Expect = 4e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||| || |||| ||||||||||||||| |||| | ||||||||||| |||||||||| Sbjct 476 TGGTGATCCCGGCAGGATTCGAACCTGCGACCATCAGCTTAGAAGGCTGGTGCTCTATCC 535 Query 21123 AGCTGAGCTACGGGGCCG 21140 |||||||||||||| ||| Sbjct 536 AGCTGAGCTACGGGACCG 553 >seq65192 Length=2464 Score = 87.8 bits (96), Expect = 5e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||| || |||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 2217 TGGTGAGCCCGACAGGATTCGAACCTGTGACCGCCTCCTTAGAAGGGAGGTGCTCTATCC 2276 Query 21123 AGCTGAGCTACGGGGCCG 21140 |||||||||||| | ||| Sbjct 2277 AGCTGAGCTACGAGCCCG 2294 >seq24360 Length=266 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 21052 AATCGAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGA 21111 ||||||| | ||||||||||| ||||||||||||||| ||| | ||||| ||| | Sbjct 87 AATCGAAAT--TGGCGACCCCGGCAGGATTCGAACCTGCAACCTGCCCCTTAGGAGGGGG 30 Query 21112 ATGCTCTATCCAGCTGAGCTACGGGGCCG 21140 |||||||||||| ||||| ||||||||| Sbjct 29 CTGCTCTATCCAGTTGAGCCACGGGGCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139102663901824