Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq19544 159 5e-34 seq108602 141 1e-28 seq97248 141 1e-28 seq80117 122 1e-22 seq87644 107 3e-18 seq14831 104 4e-17 seq44811 95.1 2e-14 seq80021 87.8 3e-12 >seq19544 Length=280 Score = 159 bits (176), Expect = 5e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || || || ||||| || ||||| |||| || ||||| || Sbjct 275 TGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCCG 216 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | |||||||| | ||| || ||| ||| ||||| || ||||| ||||||| Sbjct 215 ATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAAC 156 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || |||||||| || |||||||| ||| ||||| ||| | ||||| |||| Sbjct 155 AAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAATA 96 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| ||| | || | |||||||| Sbjct 95 TCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGG 50 >seq108602 Length=371 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || |||||||| || || | ||||| ||||| | Sbjct 346 TGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCTG 287 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || | ||| || ||| |||||| || |||||||| || |||| Sbjct 286 ACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAAC 227 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || ||||||||||| || |||||| || |||||||||| | Sbjct 226 AGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAACA 167 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| ||| ||||||| || | || | |||||||| Sbjct 166 TTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGG 121 >seq97248 Length=461 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || || |||||||| | ||||| || || | Sbjct 184 TGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAATCAG 243 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || | ||| || ||| ||||||||||| ||||| ||||||| Sbjct 244 ATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 303 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || || || |||||||| ||| ||||| ||| | ||||| || | Sbjct 304 AGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAACA 363 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || ||| | ||||| || | || | |||||||| Sbjct 364 TTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGG 409 >seq80117 Length=1002 Score = 122 bits (134), Expect = 1e-22 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 || ||| | ||||| |||||| | | |||||| | | || |||||||||| || Sbjct 505 AAGACACTTACAGGCAAAACACTCAATATTGAGATGCTAAGTAGCGATACTATTTCGGAT 446 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 |||||| || || ||| || ||||| |||||||| |||||||||||||| || ||| Sbjct 445 TTAAAAATAAATATTCAAGATATGGAAGGAATTCCACCAGATCAACAAAGACTTATATTT 386 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA-TACAAAAAG-AAT 146223 | ||| ||||||||||| |||| || ||||||| || || || ||| | | | | Sbjct 385 GGAGGAAAACAATTAGAAGATAGTATTACGTTAAGTGAATACTTTATTACTAGCGGTAGT 326 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || | |||||||||||| |||||||||||||| Sbjct 325 GTAC--TGCATTTAGTATTAAGATTAAGAGGAGGT 293 >seq87644 Length=678 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 |||||| ||| ||||||||| ||||| || |||||||||||| | || ||||| || || Sbjct 233 TAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAA 292 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||||||| ||| ||||| ||| | || || ||||| || |||||||| || | || Sbjct 293 GCAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCA 352 Query 146234 TTTAGTATTACGATTAAGAGGAGG 146257 | | || | |||||||||| || Sbjct 353 TCTCGTCCTCAGATTAAGAGGTGG 376 >seq14831 Length=294 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146103 AATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATT 146162 ||| | || | |||||| ||| ||||||||||| || || || ||||| ||||| || Sbjct 9 AATATTAAGACTAAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATC 68 Query 146163 TTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAA 146222 |||||||| ||| | || ||| ||||| ||| |||| || ||||| |||||||| Sbjct 69 TTTGCAGGAAAATGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAG 128 Query 146223 TCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || |||||||| | || | ||||||||||||| Sbjct 129 TCTACTATCCACCTTGTCCTTAGATTAAGAGGAGG 163 >seq44811 Length=222 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | || || || | ||| || || |||||||| |||||||| |||||| Sbjct 213 GATACCATTGACAACGTTAAGACTAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 154 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || ||||| || || ||||| || || |||||| | | || || || Sbjct 153 CAAAGACTTATCTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCCGACTACAAC 94 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || ||||| ||| |||| || || | || | |||||||| Sbjct 93 ATTCAGAAGGAATCTACTCTCCACTTGGTCCTCAGACTTAGAGGAGG 47 >seq80021 Length=1005 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 146044 TAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAA 146103 |||| ||| | ||||| |||||| | | |||||| | | || |||||||||| Sbjct 513 TAAAGACACTTACAGGCAAAACACTCAATATTGAGATGCTAAGTAGCGATACTATTTCGG 454 Query 146104 ATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 || ||| || || || ||| || ||| | ||| ||| |||||||||||||| || | Sbjct 453 ATTTAATAATAAATATTCAAGATATGGAAAGAATTTCACTTGATCAACAAAGACTTATAT 394 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAA 146199 ||| ||| ||||| ||||| |||| || ||||||| Sbjct 393 TTGAAGGAAAACATTTAGAAGATAGTATTACGTTAA 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785093754563840