Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq59792 102 1e-16 seq42898 98.7 2e-15 seq85080 95.1 2e-14 >seq59792 Length=6488 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44642 GCCGTGATGCCTGATGTACACTGGGGAATGGGCGCGACCATTGGTTCGGTTATTGCGACT 44701 |||| ||||| ||||| || || ||||| || ||||| | |||||||||||| | || Sbjct 5869 GCCGCCATGCCGGATGTTCATTGCGGAATTGGTGCGACGGTCGGTTCGGTTATTCCAACC 5928 Query 44702 AAAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATTGGTTGTGGGATGATTGC 44757 ||||| ||||||||||| ||||| || || || ||||| || ||||| |||| ||| Sbjct 5929 AAAGGAGCGATTATTCCCGCCGCGGTTGGCGTGGATATAGGCTGTGGTATGAATGC 5984 >seq42898 Length=225 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 71875 GAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGCTG 71934 ||||||||||| || ||||| ||||| || || ||||| |||||||||||||| || Sbjct 137 GAAGCCATCCGATTTTATGTTAGCTTTGCTTGTTCTTTTGCTTTTGCTGAACGCGAATTG 78 Query 71935 ATGGAAGGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATCTGACC 71994 | |||||||| || ||||| ||||| | || || ||||||||||| | || | ||| Sbjct 77 CTTGAAGGCAATGCGAAGATAATTAAGTTAATAGCGCGTGATGAAGCATTACACTTAACC 18 Query 71995 GGCACCCAGCACAT 72008 || || || || || Sbjct 17 GGTACTCAACATAT 4 >seq85080 Length=768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 198/285 (69%), Gaps = 15/285 (5%) Strand=Plus/Plus Query 45014 GGCACACTGGGTAGCGGTAACCACTTCGTTGAAATCTGTTTAGACGAAGAGCAAC-GCGT 45072 || ||||| || | || |||||||| | || || || |||||||| |||| | |||| Sbjct 350 GGAACACTCGGCACTGGCAACCACTTTATCGAGATTTGCTTAGACGA-GAGCGATAGCGT 408 Query 45073 TTGGGTAATGCTTCATTCAGGTTCACGTGGTATCGGCAACACCATCGGTAAATACTTCAT 45132 ||| | ||| | || || ||||||||| | |||||| |||||| | |||||||| Sbjct 409 GTGGTTCATGTTACACAGCGGCTCACGTGGTGTGGGCAACCGCATCGGCACTTACTTCAT 468 Query 45133 CGAGAAAGCCAAAGAAGAGATGAACCGTTTCTTCGTCCATTTAGTTG----ACCAAGATC 45188 |||| |||| || |||| ||| | || | | ||| ||||| | ||||| Sbjct 469 CGAGCAAGCTAAGAAAGATATGGAGCG----CTGGATGATTCAGTTGCCACATAAAGATT 524 Query 45189 TGGCGTATCTCCCAGAAGGCTCTCAGTATTACGATGACTACTTGCAAGCGGTGCAATGGG 45248 |||| ||| | |||||||| || | | | | || ||| | |||| || |||||| Sbjct 525 TGGCTTATTTACCAGAAGGGTCGGACAACTTTGTCGATTACGTTGAAGCTGTTGAATGGG 584 Query 45249 CACAAGACTT-TGCAGCGC-TCAATCGTGCGGTGATGCT-GAGCG 45290 | | |||||| ||| |||| |||| || | ||||||| | ||||| Sbjct 585 CTC-AGACTTATGC-GCGCATCAACCGAGAGGTGATGATGGAGCG 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 866157400212480