Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq33344 93.3 5e-14 seq97209 89.7 6e-13 seq104435 87.8 2e-12 >seq33344 Length=244 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 72101 ATTTGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTA 72160 |||||||||||| || |||| |||||| | ||||| || |||||||| || ||||||||| Sbjct 22 ATTTGGTGCCGGATATCGGAATCGAACTGATGACCTTCGCATTACAAGTGCGCTGCTCTA 81 Query 72161 CCAACTGAGCTAAACCGGC 72179 ||| ||||||||| ||||| Sbjct 82 CCATCTGAGCTAATCCGGC 100 >seq97209 Length=479 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| | ||||||||||| ||||| || ||||||||| || |||||||||| Sbjct 342 TGGTGCCGGCTGCAGGATTCGAACCCGCGACCCCCTGATTACAAATCAGGTGCTCTACCA 283 Query 72164 ACTGAGCTAAACCGGCTTG 72182 |||||||||| |||||||| Sbjct 282 ACTGAGCTAAGCCGGCTTG 264 >seq104435 Length=401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 74606 ATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTA 74665 || ||||| ||||| ||||||||||||| | |||| ||||||||||||| ||||||| Sbjct 2 ATATGGTGGGCCCAGAAGGACTCGAACCTTCGACCTGCCGATTATGAGTCGGATGCTCTA 61 Query 74666 ACCAATTGAGCTATAGGGCC 74685 ||||| |||||||| ||||| Sbjct 62 ACCAACTGAGCTAT-GGGCC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553598837765120