Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq77519 104 1e-17 seq59718 89.7 3e-13 >seq77519 Length=1156 Score = 104 bits (114), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 37820 GGCTTTGATCAGATTGATTGGGTTATTAATGAAATTAAAACTAACCCTACATCACGCCGT 37879 ||| | || ||| | | |||||||||||| || |||||||| ||||||| || | ||| Sbjct 650 GGCATAGACCAGCTCGCTTGGGTTATTAACGAGATTAAAACCAACCCTAGCTCTAGGCGT 709 Query 37880 CTAATTGTCAATGGATGGAATCCACATGA---AGTAGATAAGGC---AGCA---TTGCCA 37930 ||||| || | |||||| || || || ||| | ||| ||| || || Sbjct 710 CTAATCGTATCGGCATGGAACCCTGGCGAGATAGAAGAAATGGCCAAAGCCGGTTTACCG 769 Query 37931 CCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGG---AAAACTAAGCTGTCAGTTA 37987 || || ||||| || ||||| || | ||| | | | |||||| || || ||||| Sbjct 770 CCGTGCCATACCTTATTCCAATTTTATGTGTCGCACGATAAAAAACTGAGTTGCCAGTTG 829 Query 37988 TATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGC 38043 |||||||| ||||||||||| ||||| || || || ||||| ||||| || || || Sbjct 830 TATCAACGAAGTGCTGATTTATTCTTGGGCGTACCGTTTAACATTGCTAGTTACGC 885 >seq59718 Length=6799 Score = 89.7 bits (98), Expect = 3e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 37922 GCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGT 37981 || || || ||||||||| | |||||||| |||| || | | |||||| ||||||| Sbjct 1888 GCCTTACCGCCTTGTCATTCTTTGTTCCAATTCTACGTTGCTGACGGAAAATTAAGCTGC 1829 Query 37982 CAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTAT 38041 || || || ||| | || || ||| |||||||| ||||||||||| |||||| || Sbjct 1828 CAATTGTACCAAAGAAGCGCGGATACTTTCTTAGGCGTTCCATTTAACATTGCATCTTAC 1769 Query 38042 GCGTTGCTTACA 38053 || ||||| ||| Sbjct 1768 GCATTGCTCACA 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248478611077216