Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq61577 95.1 2e-14 seq61441 89.7 7e-13 seq70280 87.8 2e-12 >seq61577 Length=3671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 193811 TTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACA 193870 ||||||||| | ||||| ||||||||| | ||||| |||||||| || | |||| Sbjct 3230 TTATTATCAAAGACTTAAGCATATGGTTCAAGATAAGATGCATGCAAGGGCTAGAGGACC 3289 Query 193871 AGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATT 193930 | ||||| | ||| | ||||||| | | ||| | ||| ||||||||| |||||| Sbjct 3290 AATGACTTCATTAACTAGACAACCTACTGAAGGTAGATCTAGAGGTGGAGGACAAAGATT 3349 Query 193931 TGGAGAAATGGAGAAAGACTGTATT 193955 ||||||||||| | ||||||| || Sbjct 3350 AGGAGAAATGGAAAGAGACTGTCTT 3374 >seq61441 Length=3753 Score = 89.7 bits (98), Expect = 7e-13 Identities = 200/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 193755 ATGTATTGTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTAT 193814 |||||| ||| | ||||| |||||| | || | | || ||| | || |||||||| Sbjct 3180 ATGTATAATGGATGGACTGGAAAAAGATTGGATACAATGATCTTTTTGGGACCAACTTAC 3239 Query 193815 TATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTG 193874 || || | | || |||||||| | |||||||| ||||| ||| || ||| | | | Sbjct 3240 TACCAGAGATTAAAGCATATGGTCGATGATAAAATTCATGCCAGATCTCGTGGTCCACTC 3299 Query 193875 ACTACT-TTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGG 193933 | | ||||| ||||||||| | ||| | ||| | |||||| | |||||||| Sbjct 3300 CAGATTCTTACAA-GACAACCAACTGAAGGTAGATCTAGACATGGAGGACTCAGATTTGG 3358 Query 193934 AGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAGAAT 193993 ||||||||| | || ||||| | |||||| || || |||| | || |||||| | Sbjct 3359 AGAAATGGAAAGGGATTGTATGGTCTCTCATGGAGCAGCTAGATTCCTCAAGGAAAGACT 3418 Query 193994 GT-TTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGAT 194047 | | ||| ||||||| | ||| |||| |||| | |||||| |||| Sbjct 3419 TTATGATGT-TTCTGATTGCTACAGTGTCCATGTATGCAGAATATGTGGGTTGAT 3472 >seq70280 Length=1721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 168585 GTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAA 168644 |||||| | ||| | | ||| || || | |||||| | ||| ||| ||||| ||| Sbjct 705 GTTAAAATCTGGGATGGTAACGGCTCAAGAGAATTTCTTGATAACAATGGATTTACAGAA 646 Query 168645 AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAA 168704 ||| ||||||||||| | || ||| | ||||| || ||||||||||| |||||| || Sbjct 645 AGAGAAGAAGGTGATCTTGGACCAGTATATGGTTTCCAATGGAGACACTTTGGAGCTGAA 586 Query 168705 TATATTGACTGTG-ATACAGATTACACCGGACAAGGAGTAGA-CCAATTAAG 168754 |||| |||| || || || || ||||||||||| || | ||||||| Sbjct 585 TATA-AGACTATGCATGATGACTATGAAGGACAAGGAGTCGATCAAATTAAG 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634310963682560